Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   INR78_RS06360 Genome accession   NZ_CP063201
Coordinates   1358134..1359495 (+) Length   453 a.a.
NCBI ID   WP_223077944.1    Uniprot ID   -
Organism   Mesoflavibacter sp. SCSIO 43206     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1353134..1364495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INR78_RS06335 (INR78_06335) - 1353854..1354663 (-) 810 WP_027879614.1 glycogen/starch synthase -
  INR78_RS06340 (INR78_06340) panC 1354784..1355632 (+) 849 WP_223077941.1 pantoate--beta-alanine ligase -
  INR78_RS06345 (INR78_06345) panD 1355646..1355996 (+) 351 WP_027879612.1 aspartate 1-decarboxylase -
  INR78_RS06350 (INR78_06350) - 1355997..1356953 (+) 957 WP_223077942.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  INR78_RS06355 (INR78_06355) - 1356989..1358134 (+) 1146 WP_223077943.1 alpha/beta hydrolase -
  INR78_RS06360 (INR78_06360) radA 1358134..1359495 (+) 1362 WP_223077944.1 DNA repair protein RadA Machinery gene
  INR78_RS06365 (INR78_06365) ileS 1359609..1363013 (+) 3405 WP_223077945.1 isoleucine--tRNA ligase -
  INR78_RS06370 (INR78_06370) - 1363019..1363402 (+) 384 WP_027879607.1 TraR/DksA C4-type zinc finger protein -
  INR78_RS06375 (INR78_06375) - 1363478..1364095 (+) 618 WP_223077946.1 hypothetical protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50071.48 Da        Isoelectric Point: 6.6454

>NTDB_id=493830 INR78_RS06360 WP_223077944.1 1358134..1359495(+) (radA) [Mesoflavibacter sp. SCSIO 43206]
MAKVKTTFFCQNCGTQFSKWQGQCTSCKEWNTIVEEVVQKPEKNDWKTSTSNTSKRVSKPLKLKEIDSSQDVRLDTNDVE
FNRVLGGGIVPGSLTLLGGEPGIGKSTLLLQVSLKLPYKTLYISGEESQKQIKMRAERINPKNETCYILTETKTQNIFKQ
IEAIEPDIVIVDSIQTLHSDYIESSSGSISQIKECTTELIKFAKETNTPVILIGHITKDGHIAGPKILEHMVDTVLQFEG
DRNHVFRILRANKNRFGSTNELGIYEMQGSGLREVSNPSEILISQKDEALSGNAVAATLEGMRPLMIEVQALVSTAVYGT
PQRSATGFNAKRLNMLLAVLEKRAGFRLGAKDVFLNITGGINVDDPAIDLAVVAAILSSNEDEPLQTDFCFAAEVGLSGE
IRPVQRVEQRILEAEKLGFSTIFVSKYNKITIKPKGIKIQLVSKIEDIVDFLS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=493830 INR78_RS06360 WP_223077944.1 1358134..1359495(+) (radA) [Mesoflavibacter sp. SCSIO 43206]
ATGGCTAAAGTAAAAACAACGTTTTTTTGTCAAAATTGTGGCACGCAATTTTCTAAGTGGCAAGGTCAATGTACATCTTG
TAAAGAGTGGAATACCATTGTAGAAGAAGTGGTGCAAAAGCCTGAAAAAAACGATTGGAAAACATCAACATCCAACACTT
CAAAAAGAGTTTCAAAGCCTTTAAAACTAAAAGAAATTGATTCGTCTCAAGATGTAAGATTGGATACTAATGACGTCGAA
TTTAACCGTGTTTTAGGTGGTGGTATTGTACCAGGATCCTTAACACTTTTAGGAGGAGAACCTGGTATTGGTAAGAGTAC
ATTGCTGCTTCAAGTGTCCTTAAAATTACCTTACAAAACGTTGTATATTTCTGGTGAAGAAAGCCAGAAACAAATAAAAA
TGAGAGCAGAACGTATTAATCCAAAAAACGAAACCTGCTACATTTTAACCGAAACCAAAACTCAAAATATCTTTAAGCAA
ATCGAAGCAATTGAACCTGATATAGTTATTGTAGATTCCATTCAAACATTGCATAGTGACTATATTGAAAGTTCAAGCGG
AAGCATTTCACAAATTAAAGAATGTACTACAGAGCTAATCAAGTTTGCTAAAGAAACCAATACACCAGTAATCTTAATTG
GACATATTACAAAAGATGGTCACATTGCAGGACCAAAAATATTAGAACATATGGTAGATACTGTACTTCAGTTTGAAGGC
GATCGTAACCATGTATTCAGGATTTTAAGAGCAAACAAAAACCGTTTTGGATCAACAAACGAGCTTGGTATTTATGAGAT
GCAAGGATCTGGTTTAAGAGAAGTGTCTAACCCAAGCGAAATTTTAATTTCTCAAAAAGACGAAGCTTTATCAGGTAATG
CAGTTGCTGCAACTTTAGAAGGTATGCGTCCTTTAATGATAGAAGTACAAGCGCTAGTTAGTACAGCTGTGTATGGTACA
CCACAACGAAGTGCTACAGGTTTTAATGCCAAACGTTTAAATATGTTATTGGCAGTTTTAGAAAAGCGTGCAGGATTTAG
ATTAGGCGCTAAAGATGTTTTTTTAAATATAACTGGAGGTATTAATGTTGATGATCCAGCAATAGATTTAGCAGTAGTAG
CTGCTATTTTATCTTCAAATGAAGACGAGCCACTTCAAACCGATTTTTGTTTTGCTGCCGAAGTTGGCCTATCTGGAGAA
ATTAGACCAGTACAACGTGTAGAGCAACGTATTCTCGAAGCTGAAAAGCTAGGTTTTTCAACCATTTTTGTGTCTAAATA
CAATAAGATTACTATTAAACCTAAAGGAATAAAAATTCAATTGGTTTCAAAAATTGAAGATATTGTAGATTTTTTAAGTT
AG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(328-428)

AAA domain (AAA_25)

(70-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

50.11

100

0.501
  radA Streptococcus pneumoniae Rx1

50

99.779

0.499
  radA Streptococcus pneumoniae D39

50

99.779

0.499
  radA Streptococcus pneumoniae R6

50

99.779

0.499
  radA Streptococcus pneumoniae TIGR4

50

99.779

0.499
  radA Bacillus subtilis subsp. subtilis str. 168

49.889

99.558

0.497
  radA Streptococcus mitis SK321

50.45

98.013

0.494