Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   INR79_RS25100 Genome accession   NZ_CP063200
Coordinates   1524145..1525242 (-) Length   365 a.a.
NCBI ID   WP_223097489.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43132     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1519145..1530242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INR79_RS25085 (INR79_25090) - 1519231..1520490 (+) 1260 WP_004408225.1 hydroxymethylglutaryl-CoA reductase -
  INR79_RS25090 (INR79_25095) - 1520566..1521213 (-) 648 WP_223097485.1 hypothetical protein -
  INR79_RS25095 (INR79_25100) - 1521517..1524126 (-) 2610 WP_223097487.1 LuxQ periplasmic sensor domain-containing protein -
  INR79_RS25100 (INR79_25105) luxP 1524145..1525242 (-) 1098 WP_223097489.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  INR79_RS25105 (INR79_25110) - 1525408..1526040 (-) 633 WP_004408230.1 response regulator -
  INR79_RS25110 (INR79_25115) narQ 1526027..1527745 (-) 1719 WP_223097500.1 nitrate/nitrite two-component system sensor histidine kinase NarQ -
  INR79_RS25115 (INR79_25120) napF 1527946..1528437 (+) 492 WP_080717301.1 ferredoxin-type protein NapF -
  INR79_RS25120 (INR79_25125) - 1528440..1528742 (+) 303 WP_004408234.1 chaperone NapD -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41193.70 Da        Isoelectric Point: 8.0016

>NTDB_id=493826 INR79_RS25100 WP_223097489.1 1524145..1525242(-) (luxP) [Vibrio sp. SCSIO 43132]
MKLRHLLVGTISLALTSSLNAAQVLNGYWEYSDFLKTFPEQQSLVRNFSDVVRSEPVPLKVKQRKPVTISVIYPGEQVSD
YWRRNIKAFSKRMDELGIEYKINKVFTRPNVDIRQQSASLMEAIRNKSGYLIFTLDTGRHRKFIEHVLNSPDTKLILQNI
TTPLKAWEQNQPFMYVGFDHATGSRALASHFKSRFPRGADYSVLFFSQGYISAARGDTFIDAMSSEGENYQLRSSFYTKA
SRESGYQAAKNAIKKGDNLAFMYACSTDVALGATDAIKELGRNDIIINGWGGGSAELEAIQKGELDVTIMRMNDDTGVAM
AEAIKMDLEDKTVPTVYSGDFEIVTSQDSEERIQELKLRAFRYSD

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=493826 INR79_RS25100 WP_223097489.1 1524145..1525242(-) (luxP) [Vibrio sp. SCSIO 43132]
ATGAAATTGCGACATCTTTTGGTTGGCACCATCAGTTTGGCTTTAACGTCGAGCTTAAACGCAGCACAAGTTCTCAACGG
GTATTGGGAATACAGTGATTTCCTTAAAACCTTTCCAGAGCAGCAGTCACTGGTCAGAAACTTTAGTGATGTCGTTCGCT
CAGAGCCCGTCCCACTTAAGGTAAAACAGAGAAAACCTGTCACGATCTCGGTTATCTATCCCGGTGAGCAGGTGTCTGAT
TACTGGCGCAGAAACATCAAAGCATTCAGCAAAAGAATGGATGAACTGGGCATTGAGTATAAAATTAACAAAGTTTTTAC
TCGCCCGAATGTAGACATTCGTCAGCAAAGTGCTTCTTTGATGGAAGCCATCCGTAACAAGTCAGGCTATTTGATCTTCA
CCTTAGATACCGGTCGACACAGAAAATTCATCGAACACGTTCTCAATAGTCCAGATACCAAACTCATACTGCAAAACATC
ACCACACCGCTTAAAGCGTGGGAACAAAATCAACCCTTTATGTATGTTGGCTTTGACCATGCCACAGGAAGTCGCGCGCT
CGCCAGCCATTTTAAATCTCGTTTTCCGCGAGGCGCAGACTACTCAGTGCTCTTCTTTTCTCAGGGCTACATCAGTGCTG
CACGTGGCGATACTTTCATCGATGCCATGAGTAGCGAAGGGGAAAACTACCAACTTCGTTCATCTTTCTACACCAAGGCG
AGCCGAGAAAGTGGCTATCAGGCCGCAAAAAATGCGATTAAAAAAGGCGACAATTTAGCCTTCATGTACGCGTGTTCGAC
TGACGTGGCATTGGGTGCGACCGACGCGATTAAAGAACTTGGCAGAAATGACATAATTATCAACGGCTGGGGTGGTGGAA
GCGCTGAATTAGAAGCGATACAAAAAGGTGAATTGGATGTTACCATTATGAGAATGAACGATGATACAGGCGTTGCGATG
GCAGAGGCCATCAAAATGGATCTTGAAGACAAGACCGTACCTACCGTTTATTCCGGTGATTTTGAAATTGTCACCAGTCA
GGACAGTGAAGAAAGAATACAAGAGCTAAAATTACGTGCTTTCAGATATTCTGATTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(70-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

65.057

96.438

0.627