Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   INR79_RS24690 Genome accession   NZ_CP063200
Coordinates   1434552..1435724 (+) Length   390 a.a.
NCBI ID   WP_004408985.1    Uniprot ID   A0AAV2VT62
Organism   Vibrio sp. SCSIO 43132     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1429552..1440724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INR79_RS24670 (INR79_24675) ylqF 1429769..1430704 (+) 936 WP_022599423.1 ribosome biogenesis GTPase YlqF -
  INR79_RS24675 (INR79_24680) - 1431104..1431895 (+) 792 WP_022591889.1 EAL domain-containing protein -
  INR79_RS24680 (INR79_24685) - 1431922..1432914 (-) 993 WP_223097400.1 CobW family GTP-binding protein -
  INR79_RS24685 (INR79_24690) - 1433358..1434329 (+) 972 WP_080564084.1 TDT family transporter -
  INR79_RS24690 (INR79_24695) cqsA 1434552..1435724 (+) 1173 WP_004408985.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  INR79_RS24695 (INR79_24700) - 1435898..1437949 (-) 2052 WP_223097401.1 hybrid sensor histidine kinase/response regulator -
  INR79_RS24700 (INR79_24705) - 1438442..1439212 (-) 771 WP_223097402.1 helix-turn-helix domain-containing protein -
  INR79_RS24705 (INR79_24710) - 1439346..1440593 (+) 1248 WP_223097403.1 MFS transporter -

Sequence

Protein


Download         Length: 390 a.a.        Molecular weight: 43206.11 Da        Isoelectric Point: 6.1542

>NTDB_id=493825 INR79_RS24690 WP_004408985.1 1434552..1435724(+) (cqsA) [Vibrio sp. SCSIO 43132]
MSNLTAKPLPNFIENKLENYLEKNIYSRNNGKHIVQGLLPNDDSIVLRSNDYLAICNHDYIKERQISALTHAKREPIMSA
VFQDQTIEEGSFEQKFADFLGFDHCIITQSGWAANVGLLQTIADENTHIYIDFFAHMSLWHGAQNANSKIHPFLHNRPKN
LLKQIKKYGPGIVVIDSVYSTHGTVAPLKEFVEVANEQGCAIIVDESHSIGTHGPHGAGLLAELGLTDKVDFVTTSLAKT
FSYRAGAILCHHKVHECLPFISLPAIFSSGIIPYEMEALKATLELIKGSDERREDLFNKSHRLIAGLKSLDISTDSDSQI
VAIETGTEENTEKVRDFFELNGIFGAVFCSPATPKNKSVIRLSVNSDVSDSELDKVLTVCSLAKEKGLLQ

Nucleotide


Download         Length: 1173 bp        

>NTDB_id=493825 INR79_RS24690 WP_004408985.1 1434552..1435724(+) (cqsA) [Vibrio sp. SCSIO 43132]
ATGAGTAACTTAACAGCTAAACCGCTGCCGAATTTTATTGAGAATAAACTTGAGAACTACCTCGAGAAGAACATTTACTC
ACGAAATAACGGCAAACACATCGTCCAGGGCTTGCTGCCAAACGATGATTCGATAGTACTTCGTAGTAACGACTACTTGG
CAATCTGTAATCACGATTACATTAAGGAGAGACAAATCAGTGCGCTTACCCATGCTAAGCGCGAGCCGATCATGTCGGCG
GTATTTCAGGACCAAACCATCGAAGAAGGTTCTTTCGAGCAGAAATTTGCTGATTTTCTAGGCTTTGACCACTGCATTAT
CACTCAGTCAGGCTGGGCGGCAAACGTAGGGCTTCTTCAGACCATCGCCGATGAAAACACTCACATTTACATCGACTTTT
TCGCTCATATGTCCTTATGGCATGGTGCACAAAACGCAAACAGTAAGATCCACCCCTTCCTACACAATCGTCCTAAGAAC
TTACTGAAGCAGATAAAGAAATATGGACCCGGTATTGTGGTTATCGACTCGGTATACAGTACTCACGGAACGGTCGCACC
ATTGAAGGAGTTTGTCGAAGTCGCAAATGAGCAAGGCTGCGCGATCATCGTCGACGAATCTCATTCTATTGGTACACACG
GACCACACGGAGCCGGTTTGCTAGCTGAGCTAGGGTTAACGGATAAAGTTGATTTTGTTACCACCAGCCTGGCAAAAACG
TTTTCTTATCGAGCTGGCGCTATTTTGTGTCATCACAAAGTGCACGAATGTCTGCCCTTTATCTCACTTCCTGCCATCTT
CAGTTCGGGCATCATTCCTTACGAAATGGAGGCACTCAAAGCAACGTTGGAATTGATTAAGGGAAGCGACGAAAGACGCG
AGGATTTATTCAATAAATCTCATAGATTGATTGCTGGTTTGAAGTCTTTAGATATTAGTACAGACAGCGACTCTCAGATT
GTTGCTATAGAAACGGGAACAGAGGAAAACACAGAAAAGGTCAGAGACTTTTTCGAACTTAATGGCATTTTCGGTGCGGT
TTTTTGTAGCCCGGCAACGCCAAAAAATAAGAGTGTTATTCGCCTGTCTGTAAATAGCGATGTCAGTGATTCTGAGTTAG
ACAAAGTGCTTACTGTGTGTAGCTTGGCGAAAGAAAAAGGACTCTTACAATAG

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-377)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

54.974

97.949

0.538