Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SSAL_RS00920 Genome accession   NC_017594
Coordinates   163393..164754 (+) Length   453 a.a.
NCBI ID   WP_072903619.1    Uniprot ID   A0A1V0HAK4
Organism   Streptococcus salivarius 57.I     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 158393..169754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSAL_RS00890 (Ssal_00177) - 158910..159476 (-) 567 WP_002886989.1 MptD family putative ECF transporter S component -
  SSAL_RS00895 (Ssal_00179) - 159485..160276 (-) 792 WP_002886988.1 formate/nitrite transporter family protein -
  SSAL_RS00900 (Ssal_00180) - 160393..161643 (-) 1251 WP_002886987.1 NAD(P)H-dependent oxidoreductase -
  SSAL_RS00905 (Ssal_00181) - 161662..162264 (-) 603 WP_002886986.1 NADPH-dependent FMN reductase -
  SSAL_RS00910 (Ssal_00182) - 162472..162918 (+) 447 WP_014632560.1 dUTP diphosphatase -
  SSAL_RS00915 (Ssal_00183) - 162929..163396 (+) 468 WP_037611117.1 isochorismatase family cysteine hydrolase -
  SSAL_RS00920 (Ssal_00184) radA 163393..164754 (+) 1362 WP_072903619.1 DNA repair protein RadA Machinery gene
  SSAL_RS00925 (Ssal_00185) - 164840..165535 (+) 696 WP_014632562.1 TIGR00266 family protein -
  SSAL_RS00930 (Ssal_00186) - 165686..166183 (+) 498 WP_002885818.1 carbonic anhydrase -
  SSAL_RS00935 (Ssal_00187) - 166279..166632 (-) 354 WP_002885872.1 DUF3397 domain-containing protein -
  SSAL_RS00940 (Ssal_00188) rplK 166804..167229 (+) 426 WP_002885648.1 50S ribosomal protein L11 -
  SSAL_RS00945 (Ssal_00189) rplA 167329..168018 (+) 690 WP_002885800.1 50S ribosomal protein L1 -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49449.83 Da        Isoelectric Point: 6.6528

>NTDB_id=49381 SSAL_RS00920 WP_072903619.1 163393..164754(+) (radA) [Streptococcus salivarius 57.I]
MAKKKSTFVCRECGYNSPKYLGRCPNCSSWSSFEEEVEVQEVKNARVSLTGEKSKPTKLKEVSSINYARIKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAVRSQVE
AIKPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQIAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNSLHGMKIPEGIQVVGVTTVGEVLKKVFS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=49381 SSAL_RS00920 WP_072903619.1 163393..164754(+) (radA) [Streptococcus salivarius 57.I]
ATAGCTAAGAAAAAATCAACTTTTGTTTGTCGAGAATGTGGCTACAATTCACCCAAATATCTAGGGCGTTGCCCCAACTG
TTCTTCTTGGTCCTCTTTTGAGGAGGAAGTTGAGGTGCAGGAGGTAAAAAATGCTCGTGTCAGTTTAACGGGTGAAAAGT
CCAAACCTACTAAATTAAAAGAAGTCTCTTCAATTAATTATGCCCGCATAAAGACTGACATGGATGAGTTTAACCGTGTT
CTAGGTGGCGGTGTGGTTCCGGGTAGCCTGGTTCTTATTGGAGGAGATCCAGGGATAGGGAAATCAACTCTTCTCTTACA
AGTGTCAACACAGCTGGCTAACAAGGGAACTGTCCTCTATGTTTCTGGGGAAGAATCTGCCGAGCAAATCAAATTGCGGA
GCGAACGTTTAGGTGATATTGATAACGAATTTTATCTTTATGCTGAGACCAATATGCAAGCCGTTCGTAGCCAAGTGGAG
GCTATAAAACCCGATTTCCTCATTATCGACTCTATTCAGACCATCATGAGTCCAGAGATTTCTGGCGTTCAAGGCTCTGT
ATCTCAGGTTCGTGAAGTTACTGCTGAACTCATGCAGATTGCCAAAACCAATAACATTGCCACATTTATTGTTGGGCATG
TGACCAAGGAGGGACAGCTGGCTGGACCACGTATGTTGGAACACATGGTGGATACTGTGCTCTATTTTGAGGGAGAACGT
CATCATACCTTCCGTATTTTGCGAGCAGTCAAAAACCGTTTTGGTTCAACCAATGAGATTGGGATTTTTGAGATGCAGTC
TGGTGGTTTGGTAGAAGTGCTAAATCCTAGCCAAGTTTTCTTAGAGGAACGCCTAGACGGAGCCACAGGTTCTGCCATTG
TTGTAACAATGGAAGGTAGCAGACCTATCTTAGCTGAAGTTCAAGCCTTGGTGACCCCAACCGTCTTTGGTAATGCCAAG
CGGACAACAACAGGACTGGATTTTAACCGCGTCAGCCTCATTATGGCTGTTTTAGAGAAACGTTGTGGCCTTCTTCTCCA
AAATCAAGATGCTTATTTAAAATCAGCTGGTGGTGTCAAATTGGACGAGCCGGCTATTGACCTTGCTGTCGCTGTTGCCA
TTGCTTCTAGTTACAAGGAGCTTCCAACCAATCCACAAGAAGCCTTTATAGGAGAAATTGGCTTGACTGGAGAGATTCGC
CGAGTGACTCGTATTGAACAGCGTATTAATGAAGCTGCTAAATTAGGCTTCACTAAGATCTATGCTCCGAAGAATTCTCT
ACATGGTATGAAAATTCCAGAAGGTATCCAGGTCGTTGGCGTTACGACAGTGGGAGAAGTACTCAAAAAAGTCTTTTCTT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(63-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V0HAK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.742

100

0.887
  radA Streptococcus pneumoniae D39

88.742

100

0.887
  radA Streptococcus pneumoniae R6

88.742

100

0.887
  radA Streptococcus pneumoniae TIGR4

88.742

100

0.887
  radA Streptococcus mitis NCTC 12261

88.742

100

0.887
  radA Streptococcus mitis SK321

88.742

100

0.887
  radA Bacillus subtilis subsp. subtilis str. 168

61.369

100

0.614

Multiple sequence alignment