Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   SABB_RS09190 Genome accession   NC_021670
Coordinates   1830143..1830745 (-) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1825143..1835745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SABB_RS09170 (SABB_00554) yajC 1826639..1826899 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  SABB_RS09175 (SABB_00555) tgt 1826918..1828057 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  SABB_RS09180 (SABB_00556) queA 1828080..1829105 (-) 1026 WP_020444728.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  SABB_RS09185 (SABB_00557) ruvB 1829107..1830111 (-) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  SABB_RS09190 (SABB_00558) ruvA 1830143..1830745 (-) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  SABB_RS09195 (SABB_03950) - 1830759..1831214 (-) 456 WP_000368902.1 ACT domain-containing protein -
  SABB_RS09200 (SABB_00560) obgE 1831227..1832519 (-) 1293 WP_020444729.1 GTPase ObgE -
  SABB_RS09205 (SABB_00561) rpmA 1832874..1833158 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  SABB_RS09210 (SABB_00562) - 1833170..1833490 (-) 321 WP_016187883.1 ribosomal-processing cysteine protease Prp -
  SABB_RS09215 (SABB_00563) rplU 1833496..1833804 (-) 309 WP_000457385.1 50S ribosomal protein L21 -
  SABB_RS09220 (SABB_00564) mreD 1833971..1834501 (-) 531 WP_020444730.1 rod shape-determining protein MreD -
  SABB_RS09225 (SABB_00565) mreC 1834501..1835343 (-) 843 WP_000911041.1 rod shape-determining protein MreC -
  SABB_RS09230 - 1835543..1835662 (-) 120 WP_000840602.1 hypothetical protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=49381 SABB_RS09190 WP_000271547.1 1830143..1830745(-) (ruvA) [Staphylococcus aureus]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=49381 SABB_RS09190 WP_000271547.1 1830143..1830745(-) (ruvA) [Staphylococcus aureus]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATTA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425

Multiple sequence alignment