Detailed information NTG0493808

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: INR79_RS08125
• Genome accession: NZ_CP063199
• Coordinates: 1795143..1796567 (-)
• Length: 474 a.a.
• NCBI ID: WP_223096754.1
• Uniprot ID: -
• Organism: Vibrio sp. SCSIO 43132
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1790143..1801567

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
INR79_RS08100 (INR79_08100)	-	1790972..1791613 (+)	642	WP_022592458.1	thiopurine S-methyltransferase	-
INR79_RS08105 (INR79_08105)	purT	1791663..1792838 (-)	1176	WP_223096752.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
INR79_RS08110 (INR79_08110)	cdd	1792987..1793874 (-)	888	WP_022602038.1	cytidine deaminase	-
INR79_RS08115 (INR79_08115)	-	1794096..1794770 (-)	675	WP_004400118.1	LrgB family protein	-
INR79_RS08120 (INR79_08120)	-	1794770..1795132 (-)	363	WP_223096753.1	CidA/LrgA family protein	-
INR79_RS08125 (INR79_08125)	sbcB	1795143..1796567 (-)	1425	WP_223096754.1	exodeoxyribonuclease I	Machinery gene
INR79_RS08130 (INR79_08130)	-	1797025..1797738 (+)	714	WP_022550473.1	TetR family transcriptional regulator	-
INR79_RS08135 (INR79_08135)	-	1797744..1799018 (+)	1275	WP_223096755.1	ABC1 kinase family protein	-
INR79_RS08140 (INR79_08140)	-	1799030..1799410 (+)	381	WP_022610340.1	hypothetical protein	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54440.79 Da
• Isoelectric Point: 5.1581

>NTDB_id=493808 INR79_RS08125 WP_223096754.1 1795143..1796567(-) (sbcB) [Vibrio sp. SCSIO 43132]
MSKENQPTLFFFDYETWGTSPAKDRPSQFAGVRTDMDLNIIGEPLVIYCQPPSDYLPSPEAALITGISPQTAVSKGLPEP
EFIKKIHDELSTPNTTSLGYNSIRFDDEVSRYTLYRNFYDPYAWSWQHGNSRWDLLDVMRACHALRPEGVNWPQRDDGYT
SFKLEHLSVANGIEHENAHDAMADVIATIEMAKKVKEAQPKLFDYLFSMRHKKKLNELVDIVNMTPLMHVSGMLGAECSY
TSWMVPVAWHPTNQNAVVMVNLAMDPSPLIELDSAQLKERLYTRRDQLSEGELPVPIKLVHLNKCPVLAPAKTLTAENAE
TIGIDREQCLKNLAIIRQHPEIREKLIELYQNQNQYDVDPDVDTQLYNGFFSPADKTAMEIIREKSPEQLAGLDLNVKDA
RIAPLLFRYRARHYPWTLDETEQAKWAAHCREYFESNLPEYMQNLENLVHEHDGDEKKIALLKSVYHYVEKLVS

Nucleotide

• Length: 1425 bp

>NTDB_id=493808 INR79_RS08125 WP_223096754.1 1795143..1796567(-) (sbcB) [Vibrio sp. SCSIO 43132]
ATGTCAAAAGAAAACCAGCCGACTCTGTTCTTTTTCGATTACGAAACCTGGGGGACCAGCCCCGCTAAAGATCGACCTAG
CCAGTTTGCCGGAGTTCGCACAGACATGGATCTGAATATCATAGGTGAACCGCTTGTCATTTATTGCCAGCCTCCCTCTG
ATTACCTCCCTTCACCTGAAGCCGCGCTTATTACCGGAATCTCACCACAAACAGCTGTGAGTAAAGGACTACCAGAGCCT
GAGTTCATTAAAAAGATTCACGACGAACTTTCTACGCCAAATACCACAAGCCTTGGTTACAACAGTATTCGATTTGATGA
CGAAGTCTCTCGCTATACTCTTTATCGAAACTTTTATGACCCGTATGCCTGGAGCTGGCAGCACGGAAACTCTCGATGGG
ATTTGCTGGACGTAATGCGAGCCTGTCACGCACTTCGACCTGAAGGTGTGAACTGGCCTCAACGTGATGATGGCTATACA
AGTTTTAAGCTAGAGCATTTGTCTGTTGCCAATGGCATCGAACACGAAAATGCACACGATGCAATGGCAGATGTAATTGC
GACCATCGAAATGGCTAAGAAGGTTAAGGAAGCGCAGCCAAAGCTGTTCGATTACCTATTTAGCATGCGCCACAAAAAGA
AACTCAATGAGCTTGTCGATATCGTCAACATGACACCTTTGATGCATGTCTCCGGTATGTTGGGTGCAGAATGCTCCTAC
ACTTCGTGGATGGTTCCTGTCGCGTGGCACCCAACCAATCAAAATGCAGTTGTCATGGTCAATCTTGCCATGGACCCAAG
CCCGCTTATTGAACTGGATTCCGCACAGCTGAAAGAACGTCTCTATACAAGAAGAGATCAGCTTTCTGAAGGGGAACTTC
CAGTACCGATAAAACTCGTTCACCTGAACAAATGCCCTGTCCTCGCTCCTGCAAAAACGTTAACTGCGGAAAACGCAGAA
ACGATAGGTATTGATCGCGAGCAGTGCTTAAAAAACCTTGCCATAATTCGCCAGCACCCTGAAATTAGGGAAAAGCTTAT
TGAGCTTTACCAGAATCAAAACCAGTATGACGTAGACCCAGATGTCGACACTCAGCTCTATAACGGATTCTTCTCTCCGG
CAGACAAGACAGCAATGGAGATCATTCGAGAGAAATCACCTGAACAACTCGCTGGCTTGGATTTGAATGTAAAAGACGCA
CGAATCGCACCTCTGCTTTTCCGCTATCGTGCTCGCCACTACCCATGGACTTTGGACGAAACGGAACAAGCGAAATGGGC
AGCACATTGTCGAGAGTATTTTGAAAGTAACCTACCGGAATACATGCAGAATCTGGAAAACTTAGTTCACGAACATGACG
GTGACGAGAAAAAGATTGCCTTGCTAAAATCCGTATACCATTACGTTGAAAAATTGGTCTCTTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-190)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	75.687	99.789	0.755