Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   INR79_RS02370 Genome accession   NZ_CP063199
Coordinates   499126..499644 (+) Length   172 a.a.
NCBI ID   WP_022549569.1    Uniprot ID   U4K8G3
Organism   Vibrio sp. SCSIO 43132     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 494126..504644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INR79_RS02360 (INR79_02360) gshA 496922..498490 (+) 1569 WP_223095873.1 glutamate--cysteine ligase -
  INR79_RS02365 (INR79_02365) - 498496..499101 (+) 606 WP_004408878.1 hypothetical protein -
  INR79_RS02370 (INR79_02370) luxS 499126..499644 (+) 519 WP_022549569.1 S-ribosylhomocysteine lyase Regulator
  INR79_RS02375 (INR79_02375) - 499694..500923 (-) 1230 WP_022549570.1 YbiU family protein -
  INR79_RS02380 (INR79_02380) - 501127..502389 (-) 1263 WP_004408884.1 HlyC/CorC family transporter -
  INR79_RS02385 (INR79_02385) - 502486..503280 (-) 795 WP_004408885.1 inner membrane protein YpjD -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18919.71 Da        Isoelectric Point: 4.5235

>NTDB_id=493798 INR79_RS02370 WP_022549569.1 499126..499644(+) (luxS) [Vibrio sp. SCSIO 43132]
MPLLDSFTVDHTKMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSETGIHTLEHLYAGFMRKHLNGADIEIIDISP
MGCRTGFYMSLIGTPVESQVAEAWLAAMQDVLKVENQDQIPELNEYQCGTAAMHSLDEAKEIATAIIEAGISVNKNEDLA
LPESMLKELSVK

Nucleotide


Download         Length: 519 bp        

>NTDB_id=493798 INR79_RS02370 WP_022549569.1 499126..499644(+) (luxS) [Vibrio sp. SCSIO 43132]
ATGCCATTACTAGATAGTTTTACCGTTGATCACACCAAGATGAATGCTCCTGCCGTTCGTGTGGCTAAAACCATGCAAAC
GCCAAAAGGGGACACGATTACCGTTTTTGATCTTCGTTTTACGGCACCTAACAAAGACATTCTGTCTGAGACGGGCATCC
ACACACTTGAGCACCTGTACGCAGGTTTCATGCGTAAACACCTGAATGGCGCTGATATCGAAATTATCGATATTTCACCA
ATGGGTTGTCGTACTGGTTTCTACATGAGTCTTATCGGCACGCCTGTTGAATCTCAAGTGGCAGAGGCATGGCTTGCAGC
TATGCAAGATGTGTTAAAAGTTGAAAACCAGGATCAGATCCCCGAGCTGAACGAATACCAGTGTGGTACTGCTGCGATGC
ACTCTCTGGATGAAGCAAAAGAGATTGCAACAGCAATTATCGAAGCAGGAATTTCGGTAAACAAAAATGAAGATCTTGCA
CTACCAGAATCTATGCTGAAAGAGCTGAGCGTGAAGTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U4K8G3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.965

99.419

0.855