Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   INR79_RS02225 Genome accession   NZ_CP063199
Coordinates   467382..468368 (+) Length   328 a.a.
NCBI ID   WP_004401303.1    Uniprot ID   A0AAV2VJY7
Organism   Vibrio sp. SCSIO 43132     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 462382..473368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INR79_RS02190 (INR79_02190) ftsB 462444..462728 (+) 285 WP_004401310.1 cell division protein FtsB -
  INR79_RS02195 (INR79_02195) ispD 462737..463450 (+) 714 WP_223095854.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  INR79_RS02200 (INR79_02200) ispF 463460..463936 (+) 477 WP_004401308.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  INR79_RS02205 (INR79_02205) truD 463940..464983 (+) 1044 WP_223095856.1 tRNA pseudouridine(13) synthase TruD -
  INR79_RS02210 (INR79_02210) surE 465011..465757 (+) 747 WP_223095858.1 5'/3'-nucleotidase SurE -
  INR79_RS02215 (INR79_02215) - 465758..466384 (+) 627 WP_022597716.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  INR79_RS02220 (INR79_02220) nlpD 466394..467323 (+) 930 WP_410482891.1 murein hydrolase activator NlpD -
  INR79_RS02225 (INR79_02225) rpoS 467382..468368 (+) 987 WP_004401303.1 RNA polymerase sigma factor RpoS Regulator
  INR79_RS02230 (INR79_02230) mutS 468455..470986 (-) 2532 WP_223096941.1 DNA mismatch repair protein MutS -
  INR79_RS02235 (INR79_02235) - 471425..472042 (+) 618 WP_022549552.1 DUF1449 family protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 37786.74 Da        Isoelectric Point: 4.6196

>NTDB_id=493795 INR79_RS02225 WP_004401303.1 467382..468368(+) (rpoS) [Vibrio sp. SCSIO 43132]
MSISNAVTKVEEEFDYEAVGMEQTTREESTLTQEKQSEQKEEFEVSAKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAQQLDKPVDDVSKMLRLNERVSSVDTPIGGESEKALLDIIPDVNNSD
PEVCTQDDDIKHSLIDWLDDLNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVKQGLNME
SLFNVEND

Nucleotide


Download         Length: 987 bp        

>NTDB_id=493795 INR79_RS02225 WP_004401303.1 467382..468368(+) (rpoS) [Vibrio sp. SCSIO 43132]
ATGAGTATCAGCAATGCAGTAACGAAAGTCGAAGAAGAGTTTGATTACGAAGCGGTAGGTATGGAACAAACCACCAGGGA
AGAATCTACTCTCACTCAAGAAAAACAGTCTGAACAGAAAGAAGAATTTGAGGTAAGTGCAAAAAGTTTAGACGCCACTC
AACTGTATCTCGGAGAGATCGGTTTCTCACCTCTTCTCACAGCAGAAGAAGAAGTCCTGTATGCACGTCGCGCACTTCGA
GGAGACGAAGCCGCACGCAAACGCATGATCGAAAGTAACCTTCGTTTAGTTGTTAAAATCTCTCGCCGTTACGGTAACAG
AGGGCTGGCACTGCTCGATCTGATCGAAGAAGGTAACCTAGGGCTGATCCGTGCAGTTGAGAAATTTGATCCTGAAAGAG
GTTTCCGTTTTTCAACGTACGCAACATGGTGGATTCGTCAAACCATCGAACGTGCATTGATGAACCAAACTCGCACTATT
CGTTTGCCCATACACGTAGTGAAAGAGCTGAATATCTATTTAAGAACGGCTCGGGAGCTATCGCAAAAACTGGATCATGA
ACCAACGGCAGAAGAAATTGCTCAGCAACTTGATAAGCCCGTTGATGATGTCAGCAAAATGCTTCGTCTGAATGAAAGAG
TCAGTTCCGTGGACACCCCAATCGGTGGTGAAAGTGAGAAAGCACTCCTTGATATCATTCCAGACGTCAACAACTCTGAT
CCTGAAGTCTGTACTCAAGACGATGACATCAAACATTCTCTGATCGATTGGCTGGATGATTTGAATCCCAAGCAGAAAGA
AGTACTTGCACGCCGTTTTGGTCTTCTGGGGTATGAACCTTCAACACTGGAAGAAGTAGGTCGTGAGATCAATTTGACTC
GGGAGCGTGTACGTCAGATCCAGGTAGAAGGTCTTCGTCGACTTCGTGAGATCCTTGTGAAGCAAGGTCTGAACATGGAA
TCATTGTTCAACGTTGAAAATGACTAA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(89-158)

Sigma-70, region 4 (Sigma70_r4)

(257-310)

Sigma-70 region 3 (Sigma70_r3)

(169-242)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(51-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

83.284

100

0.851