Detailed information NTG0493785

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: INR79_RS01235
• Genome accession: NZ_CP063199
• Coordinates: 273059..274063 (-)
• Length: 334 a.a.
• NCBI ID: WP_004405365.1
• Uniprot ID: A0AAV2VU79
• Organism: Vibrio sp. SCSIO 43132
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 268059..279063

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
INR79_RS01205 (INR79_01205)	zapB	268286..268528 (+)	243	WP_004405374.1	cell division protein ZapB	-
INR79_RS01210 (INR79_01210)	rraA	268742..269272 (-)	531	WP_223095680.1	ribonuclease E activity regulator RraA	-
INR79_RS01215 (INR79_01215)	-	269351..270268 (-)	918	WP_223095682.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
INR79_RS01220 (INR79_01220)	hslU	270395..271726 (-)	1332	WP_022591190.1	HslU--HslV peptidase ATPase subunit	-
INR79_RS01225 (INR79_01225)	hslV	271737..272276 (-)	540	WP_022551985.1	ATP-dependent protease subunit HslV	-
INR79_RS01230 (INR79_01230)	-	272396..272932 (-)	537	WP_022551984.1	SPOR domain-containing protein	-
INR79_RS01235 (INR79_01235)	cytR	273059..274063 (-)	1005	WP_004405365.1	DNA-binding transcriptional regulator CytR	Regulator
INR79_RS01240 (INR79_01240)	priA	274317..276518 (-)	2202	WP_223095684.1	primosomal protein N'	-
INR79_RS01245 (INR79_01245)	rpmE	276822..277040 (+)	219	WP_004405363.1	50S ribosomal protein L31	-
INR79_RS01250 (INR79_01250)	-	277310..278569 (+)	1260	WP_022591194.1	malic enzyme-like NAD(P)-binding protein	-
INR79_RS01255 (INR79_01255)	metJ	278657..278977 (-)	321	WP_004405361.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36408.85 Da
• Isoelectric Point: 6.0502

>NTDB_id=493785 INR79_RS01235 WP_004405365.1 273059..274063(-) (cytR) [Vibrio sp. SCSIO 43132]
MATMKDVAQLAGVSTATVSRALMNPEKVSSTTRKRVESAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDSYFTEIIRG
IEDVAVENGYLVLLGDSGQQKKRESSLVNLVFTKQADGMLLLGTHLPFDVSKPEQKNLPPLVMACEFAPELELPTVHIDN
LTSSFEAVNYLTQMGHSKIAQISGPDDAALCQFRNQGYQQALRRAGITMNPTYKEMGDFTFESGQKAIAKLLALPEPPTA
VFCHNDAMAIGAIKGAKAAGLKVPQDLSVVGFDDIQFAEFCDPPLTTITQPRYEIGRQAMLMLLEILKGRDVHAGSRLLE
TELKIRDSAAPPRS

Nucleotide

• Length: 1005 bp

>NTDB_id=493785 INR79_RS01235 WP_004405365.1 273059..274063(-) (cytR) [Vibrio sp. SCSIO 43132]
ATGGCGACAATGAAGGATGTTGCCCAGCTAGCAGGAGTTTCAACTGCAACGGTATCGAGGGCTTTGATGAATCCTGAAAA
GGTTTCGTCGACGACACGTAAACGTGTGGAAAGCGCCGTTTTGGAAGCTGGTTATTCGCCGAATTCACTGGCAAGAAACT
TACGACGTAATGAATCCAAAACTATCGTTGCAATCGTCCCTGACATTTGCGACTCCTACTTTACAGAGATCATTCGCGGC
ATTGAGGATGTGGCCGTGGAAAACGGGTATCTCGTATTGTTAGGAGACAGCGGTCAGCAGAAGAAACGAGAGAGCTCACT
GGTCAACCTGGTCTTTACCAAACAAGCAGACGGCATGTTGTTATTGGGGACACACCTGCCGTTTGATGTCAGCAAACCGG
AACAGAAGAACTTGCCACCACTGGTCATGGCTTGTGAATTCGCACCGGAACTGGAATTGCCGACAGTGCACATTGATAAC
CTAACGTCTTCGTTCGAAGCGGTGAACTACCTCACCCAAATGGGTCATTCGAAGATTGCTCAGATTTCAGGACCTGACGA
TGCAGCATTGTGTCAGTTCCGTAACCAAGGTTATCAGCAGGCTTTACGTCGCGCTGGCATCACCATGAATCCAACTTACA
AAGAAATGGGCGATTTCACCTTTGAATCAGGGCAAAAGGCAATCGCAAAACTTCTGGCACTTCCGGAACCACCAACTGCC
GTTTTCTGCCACAATGACGCCATGGCAATCGGCGCTATTAAGGGAGCAAAAGCGGCTGGATTGAAAGTACCTCAAGACCT
GTCTGTTGTCGGGTTTGATGATATTCAGTTCGCAGAGTTCTGTGATCCACCATTGACGACGATTACCCAACCTCGCTATG
AGATTGGTCGTCAGGCAATGCTGATGCTGCTTGAGATACTCAAAGGCAGAGATGTACATGCCGGATCACGTCTACTGGAA
ACAGAACTGAAAATCCGAGACAGCGCAGCGCCTCCAAGAAGCTAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	85.843	99.401	0.853
cytR	Vibrio parahaemolyticus RIMD 2210633	83.483	99.701	0.832