Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SSAL_RS00615 Genome accession   NC_017594
Coordinates   100970..101680 (-) Length   236 a.a.
NCBI ID   WP_014632529.1    Uniprot ID   -
Organism   Streptococcus salivarius 57.I     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 95970..106680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSAL_RS00580 (Ssal_00111) rplQ 95973..96359 (+) 387 WP_002885709.1 50S ribosomal protein L17 -
  SSAL_RS00585 (Ssal_00112) - 96608..97903 (+) 1296 WP_014632525.1 glutamyl-tRNA synthetase -
  SSAL_RS00595 (Ssal_00114) - 98328..99209 (+) 882 WP_002885816.1 class II fructose-bisphosphate aldolase -
  SSAL_RS00600 (Ssal_00115) - 99613..99969 (+) 357 WP_045001354.1 hypothetical protein -
  SSAL_RS00605 (Ssal_00116) - 100002..100340 (+) 339 WP_102787814.1 hypothetical protein -
  SSAL_RS00610 (Ssal_00117) - 100356..100916 (+) 561 WP_014632528.1 TIGR01440 family protein -
  SSAL_RS00615 (Ssal_00118) treR 100970..101680 (-) 711 WP_014632529.1 trehalose operon repressor Regulator
  SSAL_RS00620 (Ssal_00119) treP 101837..103816 (+) 1980 WP_045001357.1 PTS system trehalose-specific EIIBC component -
  SSAL_RS00625 (Ssal_00120) treC 103871..105496 (+) 1626 WP_014632531.1 alpha,alpha-phosphotrehalase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27344.03 Da        Isoelectric Point: 7.1716

>NTDB_id=49372 SSAL_RS00615 WP_014632529.1 100970..101680(-) (treR) [Streptococcus salivarius 57.I]
MKKYQIIYKDLEKAIHDQKYQVGDFLPTEQELVQSYQVSRDTIRKALTLLVEEGLVKKIHGSGSQVINQEQINFPVSDLT
SYQELIVQQGLNSQTNVISLDKIIVDSKLSERTGFSNSRQVWRVVRQRVVDSCASVIDIDYLDTSLVPQLNRNIAEHSIY
DYIENQLNLSISHAFKEITIDNATDQDKILIDLGKDQHVVCIRSKVYLTNGKQFQFTESRHKLEKFKFVDYAKRHH

Nucleotide


Download         Length: 711 bp        

>NTDB_id=49372 SSAL_RS00615 WP_014632529.1 100970..101680(-) (treR) [Streptococcus salivarius 57.I]
ATGAAAAAATACCAGATTATTTATAAGGATTTAGAAAAAGCTATCCATGATCAAAAATATCAAGTAGGAGACTTTCTCCC
GACCGAGCAAGAACTGGTTCAATCTTACCAGGTTAGTCGAGACACTATACGAAAAGCATTAACCTTACTCGTTGAAGAAG
GCTTGGTCAAAAAGATTCATGGCTCTGGCTCCCAGGTTATTAACCAGGAACAAATCAACTTTCCTGTGTCTGACCTTACT
AGTTACCAGGAGCTAATAGTACAACAAGGCCTTAATTCGCAAACCAACGTTATTTCTCTGGATAAAATCATCGTTGATTC
CAAACTCTCAGAAAGAACTGGTTTTTCTAATAGCCGACAGGTCTGGCGTGTTGTTCGTCAAAGAGTCGTTGATAGCTGCG
CCTCTGTTATAGATATTGATTACCTAGATACTAGCCTTGTTCCTCAACTAAACCGTAACATTGCTGAACACTCTATTTAC
GACTACATCGAGAATCAGCTCAACCTTAGCATTTCCCATGCCTTTAAAGAAATCACTATTGATAATGCTACCGATCAAGA
TAAGATTCTTATCGACCTAGGTAAAGACCAGCACGTTGTTTGTATCCGTTCTAAAGTTTATTTAACTAATGGAAAACAGT
TCCAATTTACGGAAAGTCGCCACAAACTTGAAAAATTCAAATTTGTCGATTATGCCAAGCGTCATCATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(4-66)

UTRA domain (UTRA)

(88-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

60.851

99.576

0.606

Multiple sequence alignment