Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CIHUM_RS09375 Genome accession   NZ_CP063190
Coordinates   1917052..1918404 (+) Length   450 a.a.
NCBI ID   WP_035000074.1    Uniprot ID   -
Organism   Corynebacterium ihumii strain DSM 45751     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1912052..1923404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CIHUM_RS09350 (CIHUM_09335) ispF 1912871..1913356 (-) 486 WP_035000068.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  CIHUM_RS09355 (CIHUM_09340) - 1913353..1914825 (-) 1473 WP_051106510.1 HNH endonuclease signature motif containing protein -
  CIHUM_RS09360 (CIHUM_09345) ispD 1914979..1915713 (-) 735 WP_051106511.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  CIHUM_RS09365 (CIHUM_09350) - 1915658..1916248 (-) 591 WP_035000071.1 CarD family transcriptional regulator -
  CIHUM_RS09370 (CIHUM_09355) - 1916430..1916960 (+) 531 WP_035000073.1 hypothetical protein -
  CIHUM_RS09375 (CIHUM_09360) radA 1917052..1918404 (+) 1353 WP_035000074.1 DNA repair protein RadA Machinery gene
  CIHUM_RS09380 (CIHUM_09365) - 1918509..1919750 (+) 1242 WP_273680208.1 hypothetical protein -
  CIHUM_RS09385 (CIHUM_09370) - 1919743..1920408 (-) 666 WP_035000076.1 hypothetical protein -
  CIHUM_RS09390 (CIHUM_09375) - 1920418..1921038 (-) 621 WP_035000077.1 carbonic anhydrase -
  CIHUM_RS09395 (CIHUM_09380) - 1921037..1921918 (+) 882 WP_035000078.1 A/G-specific adenine glycosylase -
  CIHUM_RS09400 (CIHUM_09385) - 1921897..1922067 (-) 171 WP_074432070.1 DUF4236 domain-containing protein -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 47249.29 Da        Isoelectric Point: 8.4842

>NTDB_id=493709 CIHUM_RS09375 WP_035000074.1 1917052..1918404(+) (radA) [Corynebacterium ihumii strain DSM 45751]
MAKKPRVIHTCTECGYSSPKWLGRCPECGSWGTLQEEAPAASGPVKKSSLTPSAPASPITKVEATATKTVKSGIRELDRV
LGSGVVPGSVVLMAGEPGVGKSTLLLEVASRWAKQGRKALYVTAEESAGQVRARAERTEALVDTLYLAAESNLDVVFGHV
EQLKPSLLIVDSVQTMHAAGVEGVAGGVAQSRAVTAALTTLAKTTNIPVLLVGHVTKDGNVAGPRVLEHLVDVVLNFEGD
RQSSLRMLRGIKNRFGATDEVGCFEQTSGGIREVPDPSGLFLSHRGQTPDGSAVTVAMDGVRPILAEVQALTVDPVNKSP
RRVVTGLDFNRVPMVLAVLQARCGERTNDKDAYVATVGGVKITETATDLAVALATWSSLHEKPLPAKTVVVGEVGLAGEI
RRVPNLGRRLQEAARMGYTSAIVPAGEKLSIDGLTVRPVSTLAEALSLLS

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=493709 CIHUM_RS09375 WP_035000074.1 1917052..1918404(+) (radA) [Corynebacterium ihumii strain DSM 45751]
ATGGCAAAGAAACCCCGTGTGATCCACACCTGCACCGAGTGCGGCTACTCCTCCCCCAAGTGGCTCGGCCGCTGCCCCGA
GTGCGGGTCTTGGGGCACGCTCCAAGAGGAAGCGCCGGCTGCTTCAGGCCCGGTGAAGAAGTCCTCGCTGACACCGTCAG
CTCCCGCGAGCCCGATCACGAAGGTCGAGGCTACAGCGACGAAGACTGTCAAGTCCGGCATCCGGGAGCTGGACCGCGTG
CTCGGCTCCGGTGTGGTGCCCGGCTCCGTGGTGCTGATGGCGGGCGAGCCCGGTGTGGGCAAGTCCACGCTGTTGCTGGA
GGTGGCGTCGCGCTGGGCAAAGCAGGGGCGCAAGGCGCTCTACGTCACGGCGGAGGAATCTGCGGGCCAGGTCCGGGCCC
GCGCCGAGCGCACGGAGGCGCTGGTGGACACGCTGTATCTGGCCGCCGAGTCCAACCTGGACGTGGTGTTTGGGCACGTG
GAGCAGCTGAAACCTTCGTTGCTGATTGTGGATTCGGTGCAGACCATGCACGCCGCGGGCGTCGAAGGCGTCGCCGGTGG
CGTGGCGCAGTCTCGCGCGGTCACTGCGGCGCTGACCACGCTGGCCAAGACCACGAACATCCCGGTGCTGCTGGTGGGGC
ACGTGACCAAGGACGGCAACGTCGCCGGCCCGCGCGTGCTGGAACACCTGGTGGACGTGGTGTTGAACTTTGAGGGGGAC
AGGCAGTCGTCGCTAAGAATGCTCCGGGGCATTAAGAACCGCTTCGGCGCCACGGACGAGGTCGGCTGCTTCGAGCAGAC
CTCCGGCGGCATCCGGGAGGTGCCGGACCCGTCGGGGCTGTTCCTGTCGCACCGCGGGCAAACGCCGGACGGGTCCGCGG
TGACGGTGGCGATGGACGGCGTGCGCCCTATCCTCGCTGAGGTGCAGGCGCTGACCGTGGATCCGGTGAACAAGAGCCCG
CGGCGCGTGGTCACCGGCCTCGATTTCAACCGGGTGCCCATGGTGCTGGCAGTGCTGCAGGCTCGCTGCGGGGAACGCAC
GAACGACAAGGACGCCTATGTGGCCACCGTCGGCGGGGTGAAGATCACGGAAACGGCCACGGACCTCGCGGTCGCGTTAG
CAACGTGGTCGAGCCTGCACGAGAAGCCGCTGCCTGCGAAAACGGTGGTTGTGGGTGAGGTGGGGCTGGCGGGAGAAATC
AGGCGGGTGCCAAACCTCGGCCGCCGCCTCCAGGAGGCGGCCCGCATGGGTTACACCAGCGCGATCGTGCCCGCCGGAGA
GAAGCTGTCTATCGACGGCCTGACGGTCCGCCCCGTCTCCACCCTCGCGGAGGCGCTGTCCTTGCTAAGTTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(61-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

48.018

100

0.484
  radA Streptococcus pneumoniae D39

48.018

100

0.484
  radA Streptococcus pneumoniae R6

48.018

100

0.484
  radA Streptococcus pneumoniae TIGR4

48.018

100

0.484
  radA Streptococcus mitis SK321

48.018

100

0.484
  radA Streptococcus mitis NCTC 12261

48.018

100

0.484
  radA Bacillus subtilis subsp. subtilis str. 168

43.326

100

0.44