Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   INQ48_RS27615 Genome accession   NZ_CP063166
Coordinates   5895214..5895612 (-) Length   132 a.a.
NCBI ID   WP_057590817.1    Uniprot ID   A0A2E9BVN5
Organism   Variovorax paradoxus strain VAI-C     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5890214..5900612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INQ48_RS27600 (INQ48_27580) - 5891921..5894248 (-) 2328 WP_203202916.1 methyl-accepting chemotaxis protein -
  INQ48_RS27605 (INQ48_27585) - 5894295..5894828 (-) 534 WP_203202917.1 chemotaxis protein CheW -
  INQ48_RS27610 (INQ48_27590) - 5894848..5895213 (-) 366 WP_057590818.1 PleD family two-component system response regulator -
  INQ48_RS27615 (INQ48_27595) pilG 5895214..5895612 (-) 399 WP_057590817.1 PleD family two-component system response regulator Regulator
  INQ48_RS27620 (INQ48_27600) - 5895694..5895864 (-) 171 WP_007838397.1 rubredoxin -
  INQ48_RS27625 (INQ48_27605) - 5895976..5896941 (+) 966 WP_203202918.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  INQ48_RS27630 (INQ48_27610) hemL 5896961..5898247 (+) 1287 WP_203202919.1 glutamate-1-semialdehyde 2,1-aminomutase -
  INQ48_RS27635 (INQ48_27615) - 5898257..5899657 (-) 1401 WP_203202920.1 amidase family protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14680.84 Da        Isoelectric Point: 7.9041

>NTDB_id=493686 INQ48_RS27615 WP_057590817.1 5895214..5895612(-) (pilG) [Variovorax paradoxus strain VAI-C]
MGPNGSGYKVLVIDDSNTIRRSAEIFLKQGGHEVLLAEDGFDALSKVNDHKPHLIFCDILMPRLDGYQTCAIIKRNAHFS
KVPVVMLSSKDGVFDKARGRMVGSQDYLTKPFTKDQLLQAVQQFGNVSQEVQ

Nucleotide


Download         Length: 399 bp        

>NTDB_id=493686 INQ48_RS27615 WP_057590817.1 5895214..5895612(-) (pilG) [Variovorax paradoxus strain VAI-C]
ATGGGCCCGAATGGATCAGGTTACAAGGTGCTCGTCATCGACGACAGCAACACCATCCGGCGCAGTGCCGAGATTTTTCT
GAAGCAGGGTGGTCACGAGGTTCTCCTCGCCGAAGACGGCTTCGACGCGCTCTCCAAGGTTAACGACCACAAGCCGCACC
TGATTTTCTGCGACATCCTGATGCCGCGGCTGGACGGCTACCAGACCTGCGCCATCATCAAGCGCAACGCCCATTTCTCC
AAGGTCCCGGTCGTGATGCTGTCGTCCAAGGACGGCGTGTTCGACAAGGCGCGCGGCCGCATGGTCGGATCGCAAGACTA
CCTGACCAAGCCTTTCACCAAAGACCAGCTGCTGCAGGCCGTGCAGCAGTTCGGCAACGTTTCACAGGAAGTGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2E9BVN5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

61.404

86.364

0.53