Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   IMY50_RS20775 Genome accession   NZ_CP063158
Coordinates   4103280..4104074 (-) Length   264 a.a.
NCBI ID   WP_011110369.1    Uniprot ID   A0A9Q5QPF5
Organism   Bacillus cereus strain CF4-51     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 4098280..4109074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMY50_RS20750 (IMY50_20745) - 4098806..4100878 (-) 2073 WP_065229332.1 sigma-54-dependent Fis family transcriptional regulator -
  IMY50_RS20755 (IMY50_20750) - 4101016..4101249 (+) 234 WP_065229333.1 DUF2627 domain-containing protein -
  IMY50_RS20760 (IMY50_20755) - 4101299..4102027 (-) 729 WP_065229334.1 glycerophosphodiester phosphodiesterase -
  IMY50_RS20765 (IMY50_20760) - 4102078..4102224 (+) 147 WP_001247671.1 YycC family protein -
  IMY50_RS20770 (IMY50_20765) - 4102464..4103027 (-) 564 WP_071713555.1 PRK06770 family protein -
  IMY50_RS20775 (IMY50_20770) spo0A 4103280..4104074 (-) 795 WP_011110369.1 sporulation transcription factor Spo0A Regulator
  IMY50_RS20780 (IMY50_20775) spoIVB 4104365..4105663 (-) 1299 WP_002000940.1 SpoIVB peptidase -
  IMY50_RS20785 (IMY50_20780) recN 4105782..4107521 (-) 1740 WP_029443279.1 DNA repair protein RecN Machinery gene
  IMY50_RS20790 (IMY50_20785) argR 4107786..4108235 (-) 450 WP_001032580.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29415.18 Da        Isoelectric Point: 7.1175

>NTDB_id=493643 IMY50_RS20775 WP_011110369.1 4103280..4104074(-) (spo0A) [Bacillus cereus strain CF4-51]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLTDKQPDVLVLDIIMPHLDGLAVLEKMRHIERLKQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKANAMIKRPLPSFRSATTVDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=493643 IMY50_RS20775 WP_011110369.1 4103280..4104074(-) (spo0A) [Bacillus cereus strain CF4-51]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAACTAGTATCAATGTTAGAGAGCTATGTAGCCGCTCAAGA
TGATATGGAAGTAATCGGTACTGCTTATAATGGTCAAGAGTGTTTAAACTTATTAACAGATAAGCAACCTGATGTACTCG
TTTTAGACATTATTATGCCACACTTAGATGGTTTAGCTGTATTGGAGAAAATGCGACATATTGAAAGGTTAAAACAGCCT
AGCGTAATTATGTTGACAGCATTTGGCCAAGAAGATGTGACGAAAAAAGCAGTTGACTTAGGTGCCTCATATTTCATATT
AAAACCATTTGATATGGAGAATTTAACGAGTCATATTCGTCAAGTGAGTGGTAAAGCAAACGCTATGATTAAGCGTCCAC
TACCATCATTCCGATCAGCAACAACAGTAGATGGAAAACCGAAAAACTTAGATGCGAGTATTACGAGTATCATTCATGAA
ATTGGTGTACCCGCTCATATTAAAGGATATATGTATTTACGAGAAGCAATCTCCATGGTATACAATGATATCGAATTATT
AGGATCGATTACGAAAGTATTGTATCCAGATATCGCAAAGAAATATAATACCACAGCAAGCCGTGTGGAGCGCGCAATTC
GTCACGCAATTGAAGTAGCTTGGAGCCGTGGGAATATTGATTCTATTTCGTCCTTATTCGGTTATACAGTATCCATGTCA
AAAGCAAAACCTACGAATTCTGAGTTTATCGCAATGGTTGCGGATAAGCTGAGACTTGAACATAAAGCTAGTTGA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818