Detailed information
Bioinformatically predicted
Overview
| Name | abrB | Type | Regulator |
| Locus tag | IMY50_RS13100 | Genome accession | NZ_CP063158 |
| Coordinates | 2567347..2567625 (+) | Length | 92 a.a. |
| NCBI ID | WP_216115471.1 | Uniprot ID | - |
| Organism | Bacillus cereus strain CF4-51 | ||
| Function | repression of comK; repression of rok (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2548200..2601590 | 2567347..2567625 | within | 0 |
Gene organization within MGE regions
Location: 2548200..2601590
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IMY50_RS12990 (IMY50_12985) | - | 2548200..2548970 (+) | 771 | WP_000404441.1 | ABC transporter ATP-binding protein | - |
| IMY50_RS12995 (IMY50_12990) | - | 2548945..2550876 (+) | 1932 | WP_000144151.1 | ABC transporter permease | - |
| IMY50_RS13000 (IMY50_12995) | - | 2550945..2551616 (+) | 672 | WP_002094033.1 | lipoprotein BA_5634 family protein | - |
| IMY50_RS13005 (IMY50_13000) | - | 2551693..2552034 (-) | 342 | WP_001165517.1 | DUF3914 domain-containing protein | - |
| IMY50_RS13010 (IMY50_13005) | - | 2552314..2553555 (+) | 1242 | WP_000517062.1 | lipase | - |
| IMY50_RS13015 (IMY50_13010) | - | 2553643..2554668 (+) | 1026 | WP_000701769.1 | homoserine dehydrogenase | - |
| IMY50_RS13020 (IMY50_13015) | - | 2554758..2556206 (+) | 1449 | WP_071714874.1 | PLP-dependent aminotransferase family protein | - |
| IMY50_RS13025 (IMY50_13020) | - | 2556211..2557125 (+) | 915 | WP_002094034.1 | D-alanine--D-alanine ligase | - |
| IMY50_RS13030 (IMY50_13025) | tenA | 2557432..2558121 (+) | 690 | WP_000144516.1 | thiaminase II | - |
| IMY50_RS13035 (IMY50_13030) | - | 2558519..2558782 (+) | 264 | WP_002082716.1 | DUF3937 domain-containing protein | - |
| IMY50_RS13040 (IMY50_13035) | - | 2559332..2559643 (+) | 312 | WP_216115465.1 | heterocycloanthracin/sonorensin family bacteriocin | - |
| IMY50_RS13045 (IMY50_13040) | - | 2559793..2559927 (+) | 135 | Protein_2498 | site-specific integrase | - |
| IMY50_RS13050 (IMY50_13045) | - | 2560137..2560622 (+) | 486 | WP_071714876.1 | homoserine dehydrogenase | - |
| IMY50_RS13055 (IMY50_13050) | - | 2560933..2561634 (+) | 702 | WP_216115466.1 | DUF3962 domain-containing protein | - |
| IMY50_RS13060 (IMY50_13055) | - | 2561673..2562782 (-) | 1110 | WP_216115467.1 | tyrosine-type recombinase/integrase | - |
| IMY50_RS13065 (IMY50_13060) | - | 2563330..2564481 (+) | 1152 | WP_216115468.1 | AimR family lysis-lysogeny pheromone receptor | - |
| IMY50_RS13070 (IMY50_13065) | - | 2564519..2564665 (+) | 147 | WP_000720921.1 | hypothetical protein | - |
| IMY50_RS30655 | - | 2564821..2564949 (+) | 129 | WP_002162786.1 | hypothetical protein | - |
| IMY50_RS13075 (IMY50_13070) | - | 2564987..2565340 (-) | 354 | WP_000491236.1 | helix-turn-helix transcriptional regulator | - |
| IMY50_RS13080 (IMY50_13075) | - | 2565541..2565732 (+) | 192 | WP_000854271.1 | helix-turn-helix transcriptional regulator | - |
| IMY50_RS13085 (IMY50_13080) | - | 2565788..2566054 (+) | 267 | WP_000522030.1 | helix-turn-helix domain-containing protein | - |
| IMY50_RS13090 (IMY50_13085) | - | 2566054..2566218 (+) | 165 | WP_216115469.1 | hypothetical protein | - |
| IMY50_RS13095 (IMY50_13090) | - | 2566276..2567343 (+) | 1068 | WP_216115470.1 | DnaD domain protein | - |
| IMY50_RS13100 (IMY50_13095) | abrB | 2567347..2567625 (+) | 279 | WP_216115471.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Regulator |
| IMY50_RS13105 (IMY50_13100) | - | 2567618..2567977 (+) | 360 | WP_102956504.1 | cell division protein SepF | - |
| IMY50_RS13110 (IMY50_13105) | - | 2567996..2568163 (+) | 168 | WP_102956505.1 | DUF3954 domain-containing protein | - |
| IMY50_RS13115 (IMY50_13110) | - | 2568189..2568440 (+) | 252 | WP_102956506.1 | helix-turn-helix domain containing protein | - |
| IMY50_RS13120 (IMY50_13115) | - | 2568461..2568943 (+) | 483 | WP_216115472.1 | nucleoside triphosphate pyrophosphohydrolase family protein | - |
| IMY50_RS13125 (IMY50_13120) | - | 2569160..2569351 (+) | 192 | WP_216115473.1 | hypothetical protein | - |
| IMY50_RS13130 (IMY50_13125) | - | 2569371..2569559 (+) | 189 | WP_216115474.1 | hypothetical protein | - |
| IMY50_RS13135 (IMY50_13130) | - | 2569644..2570108 (-) | 465 | WP_046392730.1 | hypothetical protein | - |
| IMY50_RS13140 (IMY50_13135) | - | 2570955..2571524 (-) | 570 | WP_001199851.1 | cupin domain-containing protein | - |
| IMY50_RS13145 (IMY50_13140) | - | 2572645..2573925 (-) | 1281 | WP_216115475.1 | collagen-like protein | - |
| IMY50_RS13150 (IMY50_13145) | - | 2575909..2576416 (+) | 508 | Protein_2520 | ArpU family phage packaging/lysis transcriptional regulator | - |
| IMY50_RS13155 (IMY50_13150) | - | 2576391..2576933 (+) | 543 | WP_216115477.1 | site-specific integrase | - |
| IMY50_RS13160 (IMY50_13155) | - | 2577147..2578097 (+) | 951 | WP_216115478.1 | nucleoside hydrolase | - |
| IMY50_RS13165 (IMY50_13160) | - | 2578898..2580067 (+) | 1170 | WP_016081850.1 | serine hydrolase domain-containing protein | - |
| IMY50_RS13170 (IMY50_13165) | - | 2580396..2580971 (+) | 576 | WP_166696009.1 | DUF2441 domain-containing protein | - |
| IMY50_RS13175 (IMY50_13170) | - | 2581308..2581520 (+) | 213 | WP_016077624.1 | hypothetical protein | - |
| IMY50_RS13180 (IMY50_13175) | - | 2581656..2581910 (+) | 255 | WP_166696012.1 | hypothetical protein | - |
| IMY50_RS13185 (IMY50_13180) | - | 2581900..2582277 (+) | 378 | WP_166696014.1 | HNH endonuclease | - |
| IMY50_RS13190 (IMY50_13185) | - | 2582407..2582910 (+) | 504 | WP_216115479.1 | phage terminase small subunit P27 family | - |
| IMY50_RS13195 (IMY50_13190) | - | 2582912..2584606 (+) | 1695 | WP_216115480.1 | terminase TerL endonuclease subunit | - |
| IMY50_RS13200 (IMY50_13195) | - | 2584795..2586048 (+) | 1254 | WP_216115481.1 | phage portal protein | - |
| IMY50_RS13205 (IMY50_13200) | - | 2586035..2586745 (+) | 711 | WP_216115482.1 | head maturation protease, ClpP-related | - |
| IMY50_RS13210 (IMY50_13205) | - | 2586783..2587955 (+) | 1173 | WP_216115483.1 | phage major capsid protein | - |
| IMY50_RS13215 (IMY50_13210) | - | 2587976..2588263 (+) | 288 | WP_216115484.1 | head-tail connector protein | - |
| IMY50_RS13220 (IMY50_13215) | - | 2588250..2588573 (+) | 324 | WP_216115485.1 | phage head closure protein | - |
| IMY50_RS13225 (IMY50_13220) | - | 2588566..2589000 (+) | 435 | WP_000763220.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| IMY50_RS13230 (IMY50_13225) | - | 2588997..2589356 (+) | 360 | WP_216115486.1 | DUF3168 domain-containing protein | - |
| IMY50_RS13235 (IMY50_13230) | - | 2589357..2589962 (+) | 606 | WP_006921167.1 | major tail protein | - |
| IMY50_RS13240 (IMY50_13235) | - | 2590009..2590326 (+) | 318 | WP_216115487.1 | hypothetical protein | - |
| IMY50_RS13245 (IMY50_13240) | - | 2590356..2590532 (+) | 177 | WP_000344056.1 | hypothetical protein | - |
| IMY50_RS13250 (IMY50_13245) | - | 2590548..2591828 (+) | 1281 | Protein_2540 | phage tail tape measure protein | - |
| IMY50_RS13255 (IMY50_13250) | - | 2592045..2594666 (+) | 2622 | WP_216115489.1 | phage tail tape measure protein | - |
| IMY50_RS13260 (IMY50_13255) | - | 2594681..2596162 (+) | 1482 | WP_047386250.1 | distal tail protein Dit | - |
| IMY50_RS13265 (IMY50_13260) | - | 2596159..2600190 (+) | 4032 | WP_216115490.1 | phage tail spike protein | - |
| IMY50_RS13270 (IMY50_13265) | - | 2600230..2600655 (+) | 426 | WP_216115491.1 | phage holin family protein | - |
| IMY50_RS13275 (IMY50_13270) | - | 2600655..2601590 (+) | 936 | WP_216115492.1 | N-acetylmuramoyl-L-alanine amidase | - |
Sequence
Protein
Download Length: 92 a.a. Molecular weight: 10080.61 Da Isoelectric Point: 5.1546
>NTDB_id=493636 IMY50_RS13100 WP_216115471.1 2567347..2567625(+) (abrB) [Bacillus cereus strain CF4-51]
MKNTGVARKVDELGRVVIPVELRRTLGIVEGTALDFHVDGENIVLRKYEKSCFVTGEVSETNIELLGGRMFLSKEGASEL
LNFIQKSGLADA
MKNTGVARKVDELGRVVIPVELRRTLGIVEGTALDFHVDGENIVLRKYEKSCFVTGEVSETNIELLGGRMFLSKEGASEL
LNFIQKSGLADA
Nucleotide
Download Length: 279 bp
>NTDB_id=493636 IMY50_RS13100 WP_216115471.1 2567347..2567625(+) (abrB) [Bacillus cereus strain CF4-51]
ATGAAAAACACAGGCGTTGCAAGAAAAGTGGACGAGCTAGGTCGTGTAGTAATTCCAGTAGAGTTACGCAGAACTTTAGG
GATTGTCGAAGGTACGGCACTAGATTTTCATGTCGATGGGGAAAACATTGTTCTAAGGAAATATGAAAAGTCATGCTTTG
TAACGGGTGAAGTTTCTGAAACCAACATAGAGTTGCTAGGTGGCCGAATGTTTTTAAGCAAGGAAGGGGCAAGTGAATTA
CTGAATTTTATTCAGAAGAGTGGGCTGGCAGATGCCTAA
ATGAAAAACACAGGCGTTGCAAGAAAAGTGGACGAGCTAGGTCGTGTAGTAATTCCAGTAGAGTTACGCAGAACTTTAGG
GATTGTCGAAGGTACGGCACTAGATTTTCATGTCGATGGGGAAAACATTGTTCTAAGGAAATATGAAAAGTCATGCTTTG
TAACGGGTGAAGTTTCTGAAACCAACATAGAGTTGCTAGGTGGCCGAATGTTTTTAAGCAAGGAAGGGGCAAGTGAATTA
CTGAATTTTATTCAGAAGAGTGGGCTGGCAGATGCCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| abrB | Bacillus subtilis subsp. subtilis str. 168 |
60.92 |
94.565 |
0.576 |