Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   IMY50_RS12215 Genome accession   NZ_CP063158
Coordinates   2346948..2347226 (+) Length   92 a.a.
NCBI ID   WP_000842216.1    Uniprot ID   A0A9W5QHH7
Organism   Bacillus cereus strain CF4-51     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2341948..2352226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMY50_RS12195 (IMY50_12190) - 2342749..2343351 (+) 603 WP_071714841.1 hypothetical protein -
  IMY50_RS12200 (IMY50_12195) - 2343639..2344820 (+) 1182 WP_071714842.1 agmatine deiminase family protein -
  IMY50_RS12205 (IMY50_12200) - 2345301..2345552 (-) 252 WP_044306588.1 LuxR C-terminal-related transcriptional regulator -
  IMY50_RS12210 (IMY50_12205) - 2345929..2346807 (+) 879 WP_071714844.1 helix-turn-helix domain-containing protein -
  IMY50_RS12215 (IMY50_12210) abrB 2346948..2347226 (+) 279 WP_000842216.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  IMY50_RS12220 (IMY50_12215) - 2347752..2349002 (+) 1251 WP_001032616.1 hypothetical protein -
  IMY50_RS12225 (IMY50_12220) - 2349070..2349828 (+) 759 WP_000347984.1 TSUP family transporter -
  IMY50_RS12230 (IMY50_12225) - 2350081..2350740 (+) 660 WP_071714845.1 CatB-related O-acetyltransferase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10378.28 Da        Isoelectric Point: 10.0092

>NTDB_id=493635 IMY50_RS12215 WP_000842216.1 2346948..2347226(+) (abrB) [Bacillus cereus strain CF4-51]
MKSRGITRKADSMGRIVIPMEIRRSLGIVEKDSLEMFIEEDQIILRKYQSPRACALTGDISDSNISLANGKIIVSPNGME
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=493635 IMY50_RS12215 WP_000842216.1 2346948..2347226(+) (abrB) [Bacillus cereus strain CF4-51]
ATGAAATCAAGAGGAATTACTCGTAAAGCAGATAGCATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATTCTCTTGAAATGTTTATAGAAGAGGACCAGATTATTTTACGAAAATATCAATCACCAAGAGCTT
GTGCACTTACAGGGGATATTTCAGACAGCAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGTCCAAACGGGATGGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

50

97.826

0.489