Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   IMY50_RS09875 Genome accession   NZ_CP063158
Coordinates   1906869..1907156 (+) Length   95 a.a.
NCBI ID   WP_000648324.1    Uniprot ID   -
Organism   Bacillus cereus strain CF4-51     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1901869..1912156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMY50_RS09855 (IMY50_09850) - 1903045..1903242 (+) 198 WP_001048104.1 DUF4083 domain-containing protein -
  IMY50_RS09860 (IMY50_09855) - 1903273..1903734 (+) 462 WP_000024996.1 NUDIX hydrolase -
  IMY50_RS09865 (IMY50_09860) nadE 1903779..1904597 (-) 819 WP_000174904.1 ammonia-dependent NAD(+) synthetase -
  IMY50_RS09870 (IMY50_09865) - 1904872..1906752 (+) 1881 WP_001025995.1 ABC transporter permease -
  IMY50_RS09875 (IMY50_09870) abrB 1906869..1907156 (+) 288 WP_000648324.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  IMY50_RS09880 (IMY50_09875) - 1907432..1908379 (+) 948 WP_000099763.1 S8 family peptidase -
  IMY50_RS09885 (IMY50_09880) - 1908419..1908544 (-) 126 Protein_1859 transcriptional regulator -
  IMY50_RS09890 (IMY50_09885) - 1908548..1909724 (+) 1177 Protein_1860 MFS transporter -
  IMY50_RS09895 (IMY50_09890) - 1910019..1910243 (-) 225 WP_000162602.1 hypothetical protein -
  IMY50_RS09900 (IMY50_09895) - 1910328..1910675 (-) 348 WP_000426317.1 DUF4257 domain-containing protein -
  IMY50_RS09905 (IMY50_09900) - 1910872..1911399 (+) 528 WP_071714404.1 DinB family protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10587.32 Da        Isoelectric Point: 4.8408

>NTDB_id=493632 IMY50_RS09875 WP_000648324.1 1906869..1907156(+) (abrB) [Bacillus cereus strain CF4-51]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSEQNISLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=493632 IMY50_RS09875 WP_000648324.1 1906869..1907156(+) (abrB) [Bacillus cereus strain CF4-51]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGAACAGAACATATCATTAGCAAATGGAAATATTACTGTTGGGATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526