Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   IMY50_RS07710 Genome accession   NZ_CP063158
Coordinates   1483535..1484137 (-) Length   200 a.a.
NCBI ID   WP_071714821.1    Uniprot ID   -
Organism   Bacillus cereus strain CF4-51     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1478535..1489137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMY50_RS07690 (IMY50_07690) dnaD 1478857..1479564 (+) 708 WP_000728532.1 DNA replication protein DnaD -
  IMY50_RS07695 (IMY50_07695) nth 1479580..1480227 (+) 648 WP_000933035.1 endonuclease III -
  IMY50_RS07700 (IMY50_07700) - 1480231..1480749 (+) 519 WP_071714820.1 YpoC family protein -
  IMY50_RS07705 (IMY50_07705) - 1480775..1483468 (-) 2694 WP_065228536.1 PBP1A family penicillin-binding protein -
  IMY50_RS07710 (IMY50_07710) recU 1483535..1484137 (-) 603 WP_071714821.1 Holliday junction resolvase RecU Machinery gene
  IMY50_RS07715 (IMY50_07715) - 1484241..1485266 (+) 1026 WP_065228537.1 DUF2515 domain-containing protein -
  IMY50_RS30755 - 1485418..1485597 (-) 180 WP_001987054.1 hypothetical protein -
  IMY50_RS07720 (IMY50_07720) - 1485683..1485925 (+) 243 WP_001252036.1 hypothetical protein -
  IMY50_RS07725 (IMY50_07725) - 1485941..1486285 (+) 345 WP_000786937.1 YppE family protein -
  IMY50_RS07730 (IMY50_07730) - 1486318..1486509 (-) 192 WP_000242652.1 YppF family protein -
  IMY50_RS07735 (IMY50_07735) - 1486687..1487244 (+) 558 WP_000487718.1 YppG family protein -
  IMY50_RS07740 (IMY50_07740) - 1487400..1487822 (+) 423 WP_000546292.1 CotD family spore coat protein -
  IMY50_RS07745 (IMY50_07745) - 1487879..1488433 (+) 555 WP_000862916.1 DUF1273 domain-containing protein -
  IMY50_RS07750 (IMY50_07750) gpsB 1488531..1488866 (+) 336 WP_000622431.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23311.51 Da        Isoelectric Point: 9.4336

>NTDB_id=493631 IMY50_RS07710 WP_071714821.1 1483535..1484137(-) (recU) [Bacillus cereus strain CF4-51]
MTIRYPNGKRYNQASQPQKTPIKTHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDDFYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=493631 IMY50_RS07710 WP_071714821.1 1483535..1484137(-) (recU) [Bacillus cereus strain CF4-51]
ATGACCATTCGTTACCCAAATGGAAAAAGGTATAATCAAGCTTCACAACCTCAAAAAACACCTATAAAAACACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATCAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAGCCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACGACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCAAAGGAAACAAAAAATAA
AACTAGTTTCCCACTTCAAAACTTCCACCTTCATCAAATAGAACATATGAAGCAAGTGGTTGCTCATAATGGAATTGCAT
TTGTCATTATTAAATTTACACTTTTTGATGATTTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACAGGTGGACGCAAGTCGATTACGAAAGAAGAAATAGAAGAGCATGGATCCTTATTATCATGCGGTTATCACCCTCG
GATTGACTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63.5

100

0.635