Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   IMY50_RS06395 Genome accession   NZ_CP063158
Coordinates   1242031..1242354 (-) Length   107 a.a.
NCBI ID   WP_000578885.1    Uniprot ID   A0A9W5VG71
Organism   Bacillus cereus strain CF4-51     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1237031..1247354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMY50_RS06370 (IMY50_06370) - 1237341..1238627 (+) 1287 WP_000247027.1 D-alanyl-D-alanine carboxypeptidase family protein -
  IMY50_RS06375 (IMY50_06375) sipW 1238818..1239387 (+) 570 WP_000767802.1 signal peptidase I SipW -
  IMY50_RS06380 (IMY50_06380) - 1239450..1240037 (+) 588 WP_000172852.1 CalY family protein -
  IMY50_RS06385 (IMY50_06385) - 1240172..1240978 (+) 807 WP_225989847.1 DUF4047 domain-containing protein -
  IMY50_RS06390 (IMY50_06390) calY 1241365..1241958 (+) 594 WP_000053715.1 biofilm matrix protein CalY -
  IMY50_RS06395 (IMY50_06395) sinR 1242031..1242354 (-) 324 WP_000578885.1 helix-turn-helix domain-containing protein Regulator
  IMY50_RS06400 (IMY50_06400) - 1242434..1242568 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  IMY50_RS06405 (IMY50_06405) inhA1 1242911..1245301 (+) 2391 WP_001035940.1 M6 family metalloprotease immune inhibitor InhA1 -
  IMY50_RS06410 (IMY50_06410) - 1245474..1246841 (+) 1368 WP_000028384.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12349.19 Da        Isoelectric Point: 9.6244

>NTDB_id=493629 IMY50_RS06395 WP_000578885.1 1242031..1242354(-) (sinR) [Bacillus cereus strain CF4-51]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=493629 IMY50_RS06395 WP_000578885.1 1242031..1242354(-) (sinR) [Bacillus cereus strain CF4-51]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692