Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   SABB_RS07270 Genome accession   NC_021670
Coordinates   1467059..1468210 (-) Length   383 a.a.
NCBI ID   WP_000020361.1    Uniprot ID   A0A0H2XEJ4
Organism   Staphylococcus aureus     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 1462059..1473210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SABB_RS07250 (SABB_03304) - 1462455..1463252 (-) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -
  SABB_RS07255 (SABB_00219) - 1463426..1463641 (+) 216 WP_000026308.1 hypothetical protein -
  SABB_RS07260 (SABB_04950) rny 1463938..1465497 (-) 1560 WP_001050914.1 ribonuclease Y -
  SABB_RS07265 (SABB_00221) recA 1465851..1466894 (-) 1044 WP_000368166.1 recombinase RecA Machinery gene
  SABB_RS07270 (SABB_00222) cinA 1467059..1468210 (-) 1152 WP_000020361.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  SABB_RS07275 (SABB_03305) pgsA 1468437..1469015 (-) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  SABB_RS07280 (SABB_00224) - 1469049..1469441 (-) 393 WP_000859443.1 helix-turn-helix domain-containing protein -
  SABB_RS07285 (SABB_00225) - 1469460..1470287 (-) 828 WP_000214890.1 YmfK family protein -
  SABB_RS07290 (SABB_00226) ymfI 1470392..1471096 (-) 705 WP_000646227.1 elongation factor P 5-aminopentanone reductase -
  SABB_RS07295 (SABB_00227) yfmH 1471096..1472382 (-) 1287 WP_000664764.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43267.55 Da        Isoelectric Point: 6.1914

>NTDB_id=49359 SABB_RS07270 WP_000020361.1 1467059..1468210(-) (cinA) [Staphylococcus aureus]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLTNHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETILIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAVIKKIHEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDINKPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNFEFKTEQFKMSKSRNLLKNRSQNYALIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=49359 SABB_RS07270 WP_000020361.1 1467059..1468210(-) (cinA) [Staphylococcus aureus]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAACGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGCTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTAACAAATCATCATGGCATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTG
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACATTCTGAACTATTAAGATTTGCGGGAATAGGTGA
ATCTAAAGTAGAAACAATATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCGGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAACAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTCATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTGTTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTTCATATAGGCTATGATAATAACTT
TGAATTTAAAACTGAGCAATTTAAAATGTCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGCGCTCATAA
GATTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0H2XEJ4

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.146

100

0.431


Multiple sequence alignment