Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KIM29_RS09445 Genome accession   NZ_CP074839
Coordinates   1950727..1951356 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain 7_14_47A     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1945727..1956356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIM29_RS09425 (KIM29_09310) ycbZ 1946129..1947889 (-) 1761 WP_000156528.1 AAA family ATPase -
  KIM29_RS09430 (KIM29_09315) matP 1948075..1948527 (+) 453 WP_000877167.1 macrodomain Ter protein MatP -
  KIM29_RS09435 (KIM29_09320) ompA 1948602..1949642 (-) 1041 WP_000750416.1 porin OmpA -
  KIM29_RS09440 (KIM29_09325) sulA 1949999..1950508 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KIM29_RS09445 (KIM29_09330) sxy/tfoX 1950727..1951356 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KIM29_RS09450 (KIM29_09335) yccS 1951319..1953481 (-) 2163 WP_000875023.1 YccS family putative transporter -
  KIM29_RS09455 (KIM29_09340) yccF 1953491..1953937 (-) 447 WP_001261235.1 YccF domain-containing protein -
  KIM29_RS09460 (KIM29_09345) helD 1954060..1956114 (+) 2055 WP_001297106.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=493531 KIM29_RS09445 WP_000839153.1 1950727..1951356(+) (sxy/tfoX) [Escherichia coli strain 7_14_47A]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=493531 KIM29_RS09445 WP_000839153.1 1950727..1951356(+) (sxy/tfoX) [Escherichia coli strain 7_14_47A]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1