Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   INR48_RS07950 Genome accession   NZ_CP063153
Coordinates   1697067..1697696 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain M7424     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1692067..1702696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INR48_RS07930 (INR48_07930) ycbZ 1692469..1694229 (-) 1761 WP_000156482.1 Lon protease family protein -
  INR48_RS07935 (INR48_07935) matP 1694415..1694867 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  INR48_RS07940 (INR48_07940) ompA 1694943..1695983 (-) 1041 WP_001309394.1 porin OmpA -
  INR48_RS07945 (INR48_07945) sulA 1696339..1696848 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  INR48_RS07950 (INR48_07950) sxy/tfoX 1697067..1697696 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  INR48_RS07955 (INR48_07955) yccS 1697659..1699821 (-) 2163 WP_000875041.1 YccS family putative transporter -
  INR48_RS07960 (INR48_07960) yccF 1699831..1700277 (-) 447 WP_001261235.1 YccF domain-containing protein -
  INR48_RS07965 (INR48_07965) helD 1700400..1702454 (+) 2055 WP_001305911.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=493519 INR48_RS07950 WP_000839153.1 1697067..1697696(+) (sxy/tfoX) [Escherichia coli strain M7424]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=493519 INR48_RS07950 WP_000839153.1 1697067..1697696(+) (sxy/tfoX) [Escherichia coli strain M7424]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1