Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   IMZ18_RS18260 Genome accession   NZ_CP063151
Coordinates   3435278..3435568 (+) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis subsp. subtilis strain CMIN-4     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3430278..3440568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMZ18_RS18245 (IMZ18_18245) yabE 3430473..3431786 (-) 1314 WP_003226754.1 ubiquitin-like domain-containing protein -
  IMZ18_RS18250 (IMZ18_18250) dayD 3431942..3432709 (-) 768 WP_014478595.1 TatD family hydrolase -
  IMZ18_RS18255 (IMZ18_18255) metG 3432789..3434783 (-) 1995 WP_014478594.1 methionine--tRNA ligase -
  IMZ18_RS18260 (IMZ18_18260) abrB 3435278..3435568 (+) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  IMZ18_RS18265 (IMZ18_18265) rsmI 3435617..3436495 (-) 879 WP_003243457.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  IMZ18_RS18270 (IMZ18_18270) yazA 3436470..3436769 (-) 300 WP_003242983.1 GIY-YIG nuclease family protein -
  IMZ18_RS18275 (IMZ18_18275) trmNF 3436756..3437499 (-) 744 WP_003244526.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  IMZ18_RS18280 (IMZ18_18280) yabA 3437558..3437917 (-) 360 WP_003218308.1 replication initiation-control protein YabA -
  IMZ18_RS18285 (IMZ18_18285) ricT 3437932..3438759 (-) 828 WP_003226767.1 competence/sporulation regulator complex protein RicT -
  IMZ18_RS18290 (IMZ18_18290) holB 3438762..3439751 (-) 990 WP_003226770.1 DNA polymerase III subunit delta' -
  IMZ18_RS18295 (IMZ18_18295) yaaR 3439763..3440203 (-) 441 WP_009966249.1 YaaR family protein -
  IMZ18_RS18300 (IMZ18_18300) darA 3440216..3440545 (-) 330 WP_003242755.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=493499 IMZ18_RS18260 WP_003226760.1 3435278..3435568(+) (abrB) [Bacillus subtilis subsp. subtilis strain CMIN-4]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=493499 IMZ18_RS18260 WP_003226760.1 3435278..3435568(+) (abrB) [Bacillus subtilis subsp. subtilis strain CMIN-4]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1