Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   IMZ18_RS12700 Genome accession   NZ_CP063151
Coordinates   2350291..2350869 (-) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis subsp. subtilis strain CMIN-4     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2345291..2355869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMZ18_RS12665 (IMZ18_12665) lepB 2345298..2345804 (-) 507 WP_003233128.1 signal peptidase I -
  IMZ18_RS12670 (IMZ18_12670) yhjE 2345806..2346429 (-) 624 WP_014479375.1 TVP38/TMEM64 family protein -
  IMZ18_RS12675 (IMZ18_12675) - 2346581..2346952 (+) 372 WP_014476361.1 hypothetical protein -
  IMZ18_RS12680 (IMZ18_12680) yhjC 2347151..2347351 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  IMZ18_RS12685 (IMZ18_12685) yhjB 2347348..2348817 (+) 1470 WP_014479374.1 sodium:solute symporter -
  IMZ18_RS12690 (IMZ18_12690) yhjA 2348861..2349130 (-) 270 WP_014479373.1 excalibur calcium-binding domain-containing protein -
  IMZ18_RS12695 (IMZ18_12695) yhxD 2349347..2350246 (+) 900 WP_014479372.1 SDR family oxidoreductase -
  IMZ18_RS12700 (IMZ18_12700) comK 2350291..2350869 (-) 579 WP_003245329.1 competence transcription factor ComK Regulator
  IMZ18_RS12705 (IMZ18_12705) yhzC 2351162..2351395 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  IMZ18_RS12710 (IMZ18_12710) yhxC 2351423..2352280 (-) 858 WP_014479371.1 SDR family oxidoreductase -
  IMZ18_RS12715 (IMZ18_12715) comW 2352384..2353912 (+) 1529 Protein_2533 FAD-dependent oxidoreductase -
  IMZ18_RS12720 (IMZ18_12720) hemAT 2354051..2355349 (+) 1299 WP_014479367.1 heme-based aerotactic transducer HemAT -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=493485 IMZ18_RS12700 WP_003245329.1 2350291..2350869(-) (comK) [Bacillus subtilis subsp. subtilis strain CMIN-4]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=493485 IMZ18_RS12700 WP_003245329.1 2350291..2350869(-) (comK) [Bacillus subtilis subsp. subtilis strain CMIN-4]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAGTTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1