Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   IMZ18_RS10710 Genome accession   NZ_CP063151
Coordinates   1982120..1982584 (+) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis subsp. subtilis strain CMIN-4     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1977120..1987584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMZ18_RS10690 (IMZ18_10690) - 1977902..1979026 (+) 1125 WP_014478926.1 IS4-like element IS4Bsu1 family transposase -
  IMZ18_RS10695 (IMZ18_10695) ppeE 1979215..1980075 (+) 861 WP_003232400.1 metallophosphoesterase -
  IMZ18_RS10700 (IMZ18_10700) ltdD 1980132..1980626 (+) 495 WP_072174092.1 L,D-transpeptidase family protein -
  IMZ18_RS10705 (IMZ18_10705) ykuC 1980702..1981994 (+) 1293 WP_014479656.1 MFS transporter -
  IMZ18_RS10710 (IMZ18_10710) kre 1982120..1982584 (+) 465 WP_003232406.1 YkyB family protein Regulator
  IMZ18_RS10715 (IMZ18_10715) cheV 1982628..1983539 (-) 912 WP_014476655.1 chemotaxis protein CheV -
  IMZ18_RS10720 (IMZ18_10720) - 1983743..1983904 (+) 162 WP_003245246.1 hypothetical protein -
  IMZ18_RS10725 (IMZ18_10725) dapX 1984106..1985287 (+) 1182 WP_014479654.1 aminotransferase A -
  IMZ18_RS10730 (IMZ18_10730) kinA 1985284..1987113 (-) 1830 Protein_2128 sporulation histidine kinase KinA -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=493473 IMZ18_RS10710 WP_003232406.1 1982120..1982584(+) (kre) [Bacillus subtilis subsp. subtilis strain CMIN-4]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=493473 IMZ18_RS10710 WP_003232406.1 1982120..1982584(+) (kre) [Bacillus subtilis subsp. subtilis strain CMIN-4]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1