Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   IMZ18_RS10480 Genome accession   NZ_CP063151
Coordinates   1939674..1939952 (-) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis subsp. subtilis strain CMIN-4     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1934674..1944952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMZ18_RS10460 (IMZ18_10460) ade 1934736..1936469 (-) 1734 WP_014479688.1 adenine deaminase -
  IMZ18_RS10465 (IMZ18_10465) ktrC 1936624..1937289 (-) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  IMZ18_RS10470 (IMZ18_10470) ykqA 1937352..1938185 (-) 834 WP_014479687.1 gamma-glutamylcyclotransferase -
  IMZ18_RS10475 (IMZ18_10475) kinC 1938201..1939484 (-) 1284 WP_014479686.1 two-component sensor histidine kinase KinC -
  IMZ18_RS10480 (IMZ18_10480) abrB 1939674..1939952 (-) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  IMZ18_RS10485 (IMZ18_10485) mreBH 1940236..1941243 (+) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  IMZ18_RS10490 (IMZ18_10490) ykpC 1941344..1941478 (+) 135 WP_003238865.1 protein YkpC -
  IMZ18_RS10495 (IMZ18_10495) ampS 1941587..1942819 (+) 1233 WP_003232341.1 aminopeptidase -
  IMZ18_RS10500 (IMZ18_10500) panEB 1942853..1943764 (-) 912 WP_014479685.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=493471 IMZ18_RS10480 WP_003244728.1 1939674..1939952(-) (abrB) [Bacillus subtilis subsp. subtilis strain CMIN-4]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=493471 IMZ18_RS10480 WP_003244728.1 1939674..1939952(-) (abrB) [Bacillus subtilis subsp. subtilis strain CMIN-4]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576