Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   IMZ18_RS07105 Genome accession   NZ_CP063151
Coordinates   1315133..1315753 (-) Length   206 a.a.
NCBI ID   WP_014480105.1    Uniprot ID   A0A0D1KQW4
Organism   Bacillus subtilis subsp. subtilis strain CMIN-4     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1310133..1320753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMZ18_RS07085 (IMZ18_07085) dnaD 1310424..1311122 (+) 699 WP_004398499.1 DNA replication protein DnaD -
  IMZ18_RS07090 (IMZ18_07090) nth 1311141..1311800 (+) 660 WP_009967580.1 endonuclease III -
  IMZ18_RS07095 (IMZ18_07095) ypoC 1311797..1312291 (+) 495 WP_009967579.1 YpoC family protein -
  IMZ18_RS07100 (IMZ18_07100) ponA 1312367..1315111 (-) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  IMZ18_RS07105 (IMZ18_07105) recU 1315133..1315753 (-) 621 WP_014480105.1 Holliday junction resolvase RecU Machinery gene
  IMZ18_RS07110 (IMZ18_07110) yppC 1315794..1316756 (+) 963 WP_033881326.1 DUF2515 domain-containing protein -
  IMZ18_RS07115 (IMZ18_07115) sspM 1316781..1316885 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  IMZ18_RS07120 (IMZ18_07120) yppD 1317084..1317329 (+) 246 WP_004398488.1 YppD family protein -
  IMZ18_RS07125 (IMZ18_07125) yppE 1317375..1317746 (+) 372 WP_003246080.1 YppE family protein -
  IMZ18_RS07130 (IMZ18_07130) yppF 1317785..1317973 (-) 189 WP_003230690.1 YppF family protein -
  IMZ18_RS07135 (IMZ18_07135) sppG 1318160..1318537 (+) 378 WP_004398696.1 YppG family protein -
  IMZ18_RS07140 (IMZ18_07140) ypqA 1318558..1318977 (-) 420 WP_014480103.1 Hsp20/alpha crystallin family protein -
  IMZ18_RS07145 (IMZ18_07145) ptsA 1319115..1319621 (+) 507 WP_029726788.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 24019.18 Da        Isoelectric Point: 9.6240

>NTDB_id=493467 IMZ18_RS07105 WP_014480105.1 1315133..1315753(-) (recU) [Bacillus subtilis subsp. subtilis strain CMIN-4]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPIFLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=493467 IMZ18_RS07105 WP_014480105.1 1315133..1315753(-) (recU) [Bacillus subtilis subsp. subtilis strain CMIN-4]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTATATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTTTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KQW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.515

100

0.995