Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   IMZ18_RS06010 Genome accession   NZ_CP063151
Coordinates   1119542..1120345 (+) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain CMIN-4     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 1114542..1125345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMZ18_RS05990 (IMZ18_05990) yqxC 1114652..1115497 (+) 846 WP_031600677.1 TlyA family RNA methyltransferase -
  IMZ18_RS05995 (IMZ18_05995) argR 1115595..1116044 (+) 450 WP_003230265.1 arginine repressor ArgR -
  IMZ18_RS06000 (IMZ18_06000) recN 1116081..1117811 (+) 1731 WP_014480229.1 DNA repair protein RecN Machinery gene
  IMZ18_RS06005 (IMZ18_06005) spoIVB 1117986..1119266 (+) 1281 WP_014480228.1 SpoIVB peptidase -
  IMZ18_RS06010 (IMZ18_06010) spo0A 1119542..1120345 (+) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  IMZ18_RS06015 (IMZ18_06015) yqiG 1120810..1121928 (-) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  IMZ18_RS06020 (IMZ18_06020) - 1122001..1122153 (-) 153 WP_014480226.1 hypothetical protein -
  IMZ18_RS06025 (IMZ18_06025) - 1122461..1122757 (+) 297 WP_014480225.1 hypothetical protein -
  IMZ18_RS06030 (IMZ18_06030) yqiI 1122777..1123397 (+) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  IMZ18_RS06035 (IMZ18_06035) glpQB 1123476..1124207 (+) 732 WP_014480224.1 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=493466 IMZ18_RS06010 WP_003226427.1 1119542..1120345(+) (spo0A) [Bacillus subtilis subsp. subtilis strain CMIN-4]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=493466 IMZ18_RS06010 WP_003226427.1 1119542..1120345(+) (spo0A) [Bacillus subtilis subsp. subtilis strain CMIN-4]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGTCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1