Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   IMZ18_RS04255 Genome accession   NZ_CP063151
Coordinates   815049..815795 (+) Length   248 a.a.
NCBI ID   WP_072592551.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain CMIN-4     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 810049..820795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMZ18_RS04240 (IMZ18_04240) - 810277..810468 (-) 192 WP_003222590.1 hypothetical protein -
  IMZ18_RS04245 (IMZ18_04245) valS 810916..813558 (+) 2643 WP_014480461.1 valine--tRNA ligase -
  IMZ18_RS04250 (IMZ18_04250) folC 813618..814909 (+) 1292 Protein_827 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  IMZ18_RS04255 (IMZ18_04255) comC 815049..815795 (+) 747 WP_072592551.1 A24 family peptidase Machinery gene
  IMZ18_RS04260 (IMZ18_04260) spoIIB 815929..816927 (+) 999 WP_014480457.1 stage II sporulation protein SpoIIB -
  IMZ18_RS04265 (IMZ18_04265) maf 817080..817649 (+) 570 WP_014480456.1 Maf family nucleotide pyrophosphatase -
  IMZ18_RS04270 (IMZ18_04270) radC 817686..818381 (+) 696 WP_014480455.1 DNA repair protein RadC -
  IMZ18_RS04275 (IMZ18_04275) mreB 818473..819486 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  IMZ18_RS04280 (IMZ18_04280) mreC 819517..820389 (+) 873 WP_003222609.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=493447 IMZ18_RS04255 WP_072592551.1 815049..815795(+) (comC) [Bacillus subtilis subsp. subtilis strain CMIN-4]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=493447 IMZ18_RS04255 WP_072592551.1 815049..815795(+) (comC) [Bacillus subtilis subsp. subtilis strain CMIN-4]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGAGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGTATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTTGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996