Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   IMY14_RS14980 Genome accession   NZ_CP063150
Coordinates   2843092..2843838 (-) Length   248 a.a.
NCBI ID   WP_080344219.1    Uniprot ID   -
Organism   Bacillus subtilis strain s-16     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2838092..2848838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMY14_RS14955 mreC 2838498..2839370 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  IMY14_RS14960 mreB 2839401..2840414 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  IMY14_RS14965 radC 2840506..2841201 (-) 696 WP_015384272.1 DNA repair protein RadC -
  IMY14_RS14970 maf 2841238..2841807 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  IMY14_RS14975 spoIIB 2841960..2842958 (-) 999 WP_047182972.1 stage II sporulation protein SpoIIB -
  IMY14_RS14980 comC 2843092..2843838 (-) 747 WP_080344219.1 A24 family peptidase Machinery gene
  IMY14_RS14985 folC 2843978..2845270 (-) 1293 WP_015384275.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  IMY14_RS14990 valS 2845330..2847972 (-) 2643 WP_015483523.1 valine--tRNA ligase -
  IMY14_RS14995 - 2848420..2848611 (+) 192 WP_047182973.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26403.00 Da        Isoelectric Point: 9.7944

>NTDB_id=493415 IMY14_RS14980 WP_080344219.1 2843092..2843838(-) (comC) [Bacillus subtilis strain s-16]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLIQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPALVFISLLIIVAVTDLHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=493415 IMY14_RS14980 WP_080344219.1 2843092..2843838(-) (comC) [Bacillus subtilis strain s-16]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTAATTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTCTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATCTTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(100-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

98.387

100

0.984