Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   IMY14_RS12960 Genome accession   NZ_CP063150
Coordinates   2499332..2500135 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain s-16     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2494332..2505135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMY14_RS12935 glpQB 2495476..2496207 (-) 732 WP_047182859.1 glycerophosphodiester phosphodiesterase -
  IMY14_RS12940 yqiI 2496280..2496900 (-) 621 WP_080344210.1 N-acetylmuramoyl-L-alanine amidase -
  IMY14_RS12945 - 2496920..2497216 (-) 297 WP_014480225.1 hypothetical protein -
  IMY14_RS12950 - 2497524..2497676 (+) 153 WP_015384065.1 hypothetical protein -
  IMY14_RS12955 yqiG 2497749..2498867 (+) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  IMY14_RS12960 spo0A 2499332..2500135 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  IMY14_RS12965 spoIVB 2500411..2501691 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  IMY14_RS12970 recN 2501866..2503596 (-) 1731 WP_047182861.1 DNA repair protein RecN Machinery gene
  IMY14_RS12975 argR 2503633..2504082 (-) 450 WP_015384067.1 arginine repressor ArgR -
  IMY14_RS12980 yqxC 2504180..2505025 (-) 846 WP_015384068.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=493396 IMY14_RS12960 WP_003226427.1 2499332..2500135(-) (spo0A) [Bacillus subtilis strain s-16]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=493396 IMY14_RS12960 WP_003226427.1 2499332..2500135(-) (spo0A) [Bacillus subtilis strain s-16]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATTGGCGTTGCTTATAACGGACAGGAATGCCTGTCGTTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACAGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1