Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   IMY14_RS11960 Genome accession   NZ_CP063150
Coordinates   2320608..2321228 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain s-16     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2315608..2326228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMY14_RS11920 ptsA 2316739..2317245 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  IMY14_RS11925 ypqA 2317383..2317802 (+) 420 WP_174616714.1 Hsp20/alpha crystallin family protein -
  IMY14_RS11930 sppG 2317823..2318200 (-) 378 WP_015251832.1 YppG family protein -
  IMY14_RS11935 yppF 2318388..2318576 (+) 189 WP_003230690.1 YppF family protein -
  IMY14_RS11940 yppE 2318615..2318986 (-) 372 WP_003246080.1 YppE family protein -
  IMY14_RS11945 yppD 2319032..2319277 (-) 246 WP_047182790.1 DUF5446 family protein -
  IMY14_RS11950 sspM 2319476..2319580 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  IMY14_RS11955 yppC 2319605..2320567 (-) 963 WP_015383945.1 DUF2515 domain-containing protein -
  IMY14_RS11960 recU 2320608..2321228 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  IMY14_RS11965 ponA 2321250..2324009 (+) 2760 WP_047182791.1 transglycosylase domain-containing protein -
  IMY14_RS11970 ypoC 2324084..2324578 (-) 495 WP_047182792.1 YpoC family protein -
  IMY14_RS11975 nth 2324575..2325234 (-) 660 WP_174616715.1 endonuclease III -
  IMY14_RS11980 dnaD 2325253..2325951 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=493395 IMY14_RS11960 WP_004399067.1 2320608..2321228(+) (recU) [Bacillus subtilis strain s-16]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=493395 IMY14_RS11960 WP_004399067.1 2320608..2321228(+) (recU) [Bacillus subtilis strain s-16]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1