Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   IMY14_RS07875 Genome accession   NZ_CP063150
Coordinates   1511661..1511939 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain s-16     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1506661..1516939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMY14_RS07855 panEB 1507848..1508759 (+) 912 WP_047182558.1 ketopantoate reductase family protein -
  IMY14_RS07860 ampS 1508793..1510025 (-) 1233 WP_015383558.1 aminopeptidase -
  IMY14_RS07865 ykpC 1510135..1510269 (-) 135 WP_003238865.1 protein YkpC -
  IMY14_RS07870 mreBH 1510370..1511377 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  IMY14_RS07875 abrB 1511661..1511939 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  IMY14_RS07880 kinC 1512129..1513415 (+) 1287 WP_024572114.1 two-component sensor histidine kinase KinC -
  IMY14_RS07885 ykqA 1513431..1514258 (+) 828 WP_047182559.1 gamma-glutamylcyclotransferase -
  IMY14_RS07890 ktrC 1514321..1514986 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  IMY14_RS07895 ade 1515142..1516875 (+) 1734 WP_047182560.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=493389 IMY14_RS07875 WP_003244728.1 1511661..1511939(+) (abrB) [Bacillus subtilis strain s-16]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=493389 IMY14_RS07875 WP_003244728.1 1511661..1511939(+) (abrB) [Bacillus subtilis strain s-16]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576