Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   IMY14_RS06135 Genome accession   NZ_CP063150
Coordinates   1194294..1195247 (+) Length   317 a.a.
NCBI ID   WP_047182426.1    Uniprot ID   -
Organism   Bacillus subtilis strain s-16     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1189294..1200247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMY14_RS06110 argF 1191125..1192084 (+) 960 WP_047182424.1 ornithine carbamoyltransferase -
  IMY14_RS06115 yjzC 1192170..1192349 (+) 180 WP_003245356.1 YjzC family protein -
  IMY14_RS06120 yjzD 1192395..1192580 (-) 186 WP_003245236.1 DUF2929 domain-containing protein -
  IMY14_RS06125 - 1192831..1193565 (+) 735 WP_015483082.1 hypothetical protein -
  IMY14_RS06130 - 1193647..1194204 (+) 558 WP_047182425.1 hypothetical protein -
  IMY14_RS06135 med 1194294..1195247 (+) 954 WP_047182426.1 transcriptional regulator Med Regulator
  IMY14_RS06140 comZ 1195262..1195453 (+) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  IMY14_RS06145 yjzB 1195483..1195719 (-) 237 WP_015383342.1 spore coat protein YjzB -
  IMY14_RS06150 fabH 1195884..1196822 (+) 939 WP_015483083.1 beta-ketoacyl-ACP synthase III -
  IMY14_RS06155 fabF 1196845..1198086 (+) 1242 WP_003244890.1 beta-ketoacyl-ACP synthase II -
  IMY14_RS06160 yjaZ 1198162..1198947 (+) 786 WP_015383343.1 DUF2268 domain-containing protein -
  IMY14_RS06165 appD 1199139..1200125 (+) 987 WP_047182427.1 oligopeptide ABC transporter ATP-binding protein AppD -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35309.90 Da        Isoelectric Point: 4.7196

>NTDB_id=493378 IMY14_RS06135 WP_047182426.1 1194294..1195247(+) (med) [Bacillus subtilis strain s-16]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMKFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDKDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=493378 IMY14_RS06135 WP_047182426.1 1194294..1195247(+) (med) [Bacillus subtilis strain s-16]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACTTGGTCGGCGAAGATTA
TCCAGATATGAAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACGAGTGTCCATTTCAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCCTCCTTTACGTGGCAG
CCTGAGGTTGATGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATTGGCTACGTCACAGATCAATCGGATCTT
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CACCCTTGAGGGCGGCGATCATTACTACGACCTGAATACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGACA
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

99.369

100

0.994