Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   IMY14_RS04600 Genome accession   NZ_CP063150
Coordinates   911100..911894 (+) Length   264 a.a.
NCBI ID   WP_047182313.1    Uniprot ID   -
Organism   Bacillus subtilis strain s-16     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 906100..916894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMY14_RS04570 sxzA 906939..907970 (+) 1032 WP_047182309.1 iron chelate uptake ABC transporter family permease subunit -
  IMY14_RS04575 yfhB 908085..908966 (+) 882 WP_047182310.1 PhzF family phenazine biosynthesis isomerase -
  IMY14_RS04580 yfhC 909054..909638 (+) 585 WP_047182311.1 nitroreductase -
  IMY14_RS04585 yfhD 909677..909868 (-) 192 WP_014479215.1 YfhD family protein -
  IMY14_RS04590 yfhE 909935..910045 (-) 111 WP_003223230.1 YfhE family protein -
  IMY14_RS04595 yfhF 910100..911011 (-) 912 WP_047182312.1 TIGR01777 family oxidoreductase -
  IMY14_RS04600 recX 911100..911894 (+) 795 WP_047182313.1 recombination regulator RecX Regulator
  IMY14_RS04605 yfhH 911896..912210 (+) 315 WP_047182314.1 YfhH family protein -
  IMY14_RS04610 yfhI 912354..913547 (+) 1194 WP_003243500.1 MFS transporter -
  IMY14_RS04615 sspK 913579..913731 (-) 153 WP_003223241.1 small, acid-soluble spore protein K -
  IMY14_RS04620 yfhJ 913856..914125 (+) 270 WP_003243789.1 YfhJ family protein -
  IMY14_RS04625 yfhK 914270..914788 (+) 519 WP_047182316.1 SH3 domain-containing protein -
  IMY14_RS04630 spdL 914873..915205 (+) 333 WP_041517766.1 SdpC immunity protein SpdL -
  IMY14_RS04635 ephM 915192..916052 (+) 861 WP_047182317.1 epoxide hydrolase EphM -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 31043.26 Da        Isoelectric Point: 6.6686

>NTDB_id=493370 IMY14_RS04600 WP_047182313.1 911100..911894(+) (recX) [Bacillus subtilis strain s-16]
MPFITKISTQKKNTERFNIFLDDKYAFSVDADVLVKFELKKGKELDDLDIIEIQYGDEVKKGFNRALDFLSYRMRSTKEV
EDHLKKKETSPPVIAEVIHRLNDYKYLNDQEFAAAYVSTHKKTNGKGPDVLFRELRTKGIDDDTIKEALSSFSFEDQTRE
AVKHVEKLLKKDKKLSTKELKQRAQLQLQRKGFSFDVISAAMDQIEYENDEDTEKEALRLHAEKAFRKYRYDGSYESAMK
VKQFLFRKGFSLDLIEQLLQEEEY

Nucleotide


Download         Length: 795 bp        

>NTDB_id=493370 IMY14_RS04600 WP_047182313.1 911100..911894(+) (recX) [Bacillus subtilis strain s-16]
ATGCCGTTTATTACAAAAATATCAACGCAAAAAAAGAATACGGAACGCTTCAATATTTTTCTGGATGATAAATACGCCTT
CAGCGTGGACGCGGATGTGCTCGTGAAATTTGAGCTCAAGAAGGGAAAAGAACTCGATGATCTTGACATCATTGAGATTC
AATACGGCGATGAAGTGAAGAAAGGCTTCAACCGTGCGCTTGACTTTTTATCCTATCGAATGCGGTCGACGAAAGAGGTC
GAGGACCACTTAAAGAAAAAAGAAACCTCGCCCCCCGTCATTGCGGAAGTCATCCATAGGCTTAACGATTACAAGTACTT
AAACGACCAGGAATTTGCCGCAGCCTATGTCAGCACTCACAAAAAAACAAACGGAAAAGGCCCTGATGTTTTGTTCAGAG
AGCTAAGAACGAAGGGAATTGATGACGATACAATTAAGGAGGCGCTAAGTTCCTTTTCCTTTGAAGATCAGACAAGAGAA
GCGGTCAAGCATGTTGAAAAGCTTCTCAAAAAAGATAAAAAGCTTTCGACGAAAGAACTCAAACAGCGCGCCCAGCTGCA
GCTTCAGCGCAAGGGCTTCTCATTTGATGTTATCAGCGCGGCGATGGATCAGATTGAATATGAAAATGATGAAGACACAG
AGAAAGAAGCGCTGCGCCTTCACGCGGAAAAAGCGTTTAGAAAATACCGCTATGACGGCTCATATGAAAGCGCCATGAAG
GTCAAACAATTTTTATTCCGTAAAGGATTCTCACTCGATTTAATCGAGCAATTACTGCAGGAAGAGGAGTACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

99.621

100

0.996