Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   IMY14_RS00245 Genome accession   NZ_CP063150
Coordinates   44296..44586 (-) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis strain s-16     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 39296..49586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMY14_RS00205 darA 39319..39648 (+) 330 WP_003242755.1 cyclic di-AMP receptor DarA -
  IMY14_RS00210 yaaR 39661..40101 (+) 441 WP_015382556.1 YaaR family protein -
  IMY14_RS00215 holB 40113..41102 (+) 990 WP_015482689.1 DNA polymerase III subunit delta' -
  IMY14_RS00220 ricT 41105..41932 (+) 828 WP_003226767.1 competence/sporulation regulator complex protein RicT -
  IMY14_RS00225 yabA 41947..42306 (+) 360 WP_047181966.1 replication initiation-control protein YabA -
  IMY14_RS00230 trmNF 42365..43108 (+) 744 WP_003244526.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  IMY14_RS00235 yazA 43095..43394 (+) 300 WP_003242983.1 GIY-YIG nuclease family protein -
  IMY14_RS00240 rsmI 43369..44247 (+) 879 WP_041517603.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  IMY14_RS00245 abrB 44296..44586 (-) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  IMY14_RS00250 metG 45081..47075 (+) 1995 WP_015382561.1 methionine--tRNA ligase -
  IMY14_RS00255 dayD 47155..47922 (+) 768 WP_014475570.1 TatD family hydrolase -
  IMY14_RS00260 yabE 48078..49391 (+) 1314 WP_015382562.1 ubiquitin-like domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=493360 IMY14_RS00245 WP_003226760.1 44296..44586(-) (abrB) [Bacillus subtilis strain s-16]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=493360 IMY14_RS00245 WP_003226760.1 44296..44586(-) (abrB) [Bacillus subtilis strain s-16]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1