Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   IMZ86_RS01580 Genome accession   NZ_CP063143
Coordinates   347793..348458 (+) Length   221 a.a.
NCBI ID   WP_002492581.1    Uniprot ID   A0A853V4B7
Organism   Staphylococcus lugdunensis strain IVK28     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 342793..353458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMZ86_RS01560 (IMZ86_01560) - 343167..344438 (+) 1272 WP_002492564.1 nucleotide sugar dehydrogenase -
  IMZ86_RS01565 (IMZ86_01565) wecB 344481..345620 (+) 1140 WP_037540933.1 non-hydrolyzing UDP-N-acetylglucosamine 2-epimerase -
  IMZ86_RS01570 (IMZ86_01570) - 345806..347254 (-) 1449 WP_002478511.1 alkaline phosphatase -
  IMZ86_RS12280 - 347473..347577 (+) 105 Protein_316 hypothetical protein -
  IMZ86_RS01580 (IMZ86_01580) braR 347793..348458 (+) 666 WP_002492581.1 DNA-binding response regulator Regulator
  IMZ86_RS01585 (IMZ86_01585) braS 348464..349372 (+) 909 WP_002492577.1 sensor histidine kinase Regulator
  IMZ86_RS01590 (IMZ86_01590) - 349478..350227 (+) 750 WP_002492476.1 ABC transporter ATP-binding protein -
  IMZ86_RS01595 (IMZ86_01595) - 350250..352211 (+) 1962 WP_225306504.1 FtsX-like permease family protein -
  IMZ86_RS01600 (IMZ86_01600) - 352253..352702 (+) 450 WP_002492528.1 hypothetical protein -
  IMZ86_RS01605 (IMZ86_01605) - 352789..353268 (+) 480 WP_002492544.1 DUF4064 domain-containing protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25643.59 Da        Isoelectric Point: 4.7645

>NTDB_id=493290 IMZ86_RS01580 WP_002492581.1 347793..348458(+) (braR) [Staphylococcus lugdunensis strain IVK28]
MRIMIVEDDVVIRESLAGELMKWNYDVVAVDTFDDIVSCFVKYEPGLVLLDINLPTLNGFHWCQEIRKSSNVPIIFISSR
TDNMDQIMAIQMGGDDFIEKPFNLSLTVTKIQALLRRTYDLTVNHNETTVRDCKLIIDEATLYYKEESVHLSFTELQIIK
MLFDNQGKYVSRTALIEKCWESEHFIDDNTLAVNMTRLRKKLNSIGLEDFIETKKNIGYKV

Nucleotide


Download         Length: 666 bp        

>NTDB_id=493290 IMZ86_RS01580 WP_002492581.1 347793..348458(+) (braR) [Staphylococcus lugdunensis strain IVK28]
ATGAGGATTATGATTGTTGAGGATGATGTTGTGATTCGCGAGAGTTTGGCTGGTGAACTGATGAAGTGGAATTATGATGT
GGTTGCTGTAGATACCTTTGATGATATTGTGTCTTGTTTCGTAAAGTATGAACCAGGTTTAGTGTTGTTGGACATTAATT
TACCTACATTGAATGGATTTCACTGGTGCCAAGAAATTCGCAAATCGTCAAATGTACCAATTATTTTTATTAGCTCACGC
ACGGATAATATGGATCAGATTATGGCGATACAAATGGGTGGAGATGACTTTATAGAAAAACCATTTAATCTGTCATTGAC
CGTAACAAAGATTCAAGCTTTGCTTCGTCGAACTTATGATTTAACTGTGAATCATAATGAAACGACAGTTCGTGACTGTA
AGTTGATTATTGATGAAGCAACGCTTTATTACAAAGAAGAATCGGTACATTTATCATTTACAGAGTTACAAATTATTAAA
ATGCTGTTTGATAATCAAGGTAAATATGTCAGTCGCACAGCGTTAATTGAAAAATGCTGGGAGTCTGAACACTTTATTGA
TGACAATACGCTTGCGGTAAATATGACACGCTTACGCAAAAAACTTAATTCTATAGGGCTTGAAGATTTTATTGAAACAA
AAAAGAATATAGGATATAAGGTTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-111)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A853V4B7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

76.471

100

0.765