Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   INQ46_RS08400 Genome accession   NZ_CP063140
Coordinates   1753144..1753749 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Napoli strain 16-174478     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1748144..1758749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INQ46_RS08380 (INQ46_08365) - 1748539..1750299 (-) 1761 WP_000156448.1 Lon protease family protein -
  INQ46_RS08385 (INQ46_08370) matP 1750485..1750937 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  INQ46_RS08390 (INQ46_08375) ompA 1751009..1752061 (-) 1053 WP_024136609.1 porin OmpA -
  INQ46_RS08395 (INQ46_08380) sulA 1752418..1752927 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  INQ46_RS08400 (INQ46_08385) sxy/tfoX 1753144..1753749 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  INQ46_RS08405 (INQ46_08390) yccS 1753736..1755889 (-) 2154 WP_000950867.1 YccS family putative transporter -
  INQ46_RS08410 (INQ46_08395) - 1755908..1756354 (-) 447 WP_203438170.1 YccF domain-containing protein -
  INQ46_RS08415 (INQ46_08400) helD 1756478..1758532 (+) 2055 WP_203438171.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=493275 INQ46_RS08400 WP_001202375.1 1753144..1753749(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Napoli strain 16-174478]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=493275 INQ46_RS08400 WP_001202375.1 1753144..1753749(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Napoli strain 16-174478]
ATGAGAGCACTCTCTTATGACAGGATCTATAAGTCACAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTCATGAAATGCGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTCGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGTTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751