Detailed information NTG0493254

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: IMS64_RS01695
• Genome accession: NZ_CP063138
• Coordinates: 321494..322864 (-)
• Length: 456 a.a.
• NCBI ID: WP_042524471.1
• Uniprot ID: -
• Organism: Francisella philomiragia strain 18844
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 316494..327864

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IMS64_RS01675 (IMS64_01675)	-	318485..318850 (-)	366	WP_211490711.1	metalloregulator ArsR/SmtB family transcription factor	-
IMS64_RS01680 (IMS64_01680)	-	318992..319642 (+)	651	WP_211490712.1	peptidase C39 family protein	-
IMS64_RS09865	-	319649..319780 (-)	132	WP_269077520.1	hypothetical protein	-
IMS64_RS01685 (IMS64_01685)	-	319956..320954 (+)	999	WP_042516860.1	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	-
IMS64_RS01690 (IMS64_01690)	-	320951..321490 (-)	540	WP_012279928.1	CvpA family protein	-
IMS64_RS01695 (IMS64_01695)	radA	321494..322864 (-)	1371	WP_042524471.1	DNA repair protein RadA	Machinery gene
IMS64_RS01700 (IMS64_01700)	-	322873..323634 (-)	762	WP_211490713.1	PilZ domain-containing protein	-
IMS64_RS01705 (IMS64_01705)	-	323631..324233 (-)	603	WP_012279925.1	DedA family protein	-
IMS64_RS01710 (IMS64_01710)	aroC	324236..325294 (-)	1059	WP_035737703.1	chorismate synthase	-
IMS64_RS01715 (IMS64_01715)	-	325480..326106 (-)	627	WP_200162504.1	PQ-loop domain-containing transporter	-
IMS64_RS01720 (IMS64_01720)	-	326210..326815 (-)	606	WP_042516857.1	PQ-loop repeat-containing protein	-
IMS64_RS01725 (IMS64_01725)	msrB	326895..327395 (-)	501	WP_211490714.1	peptide-methionine (R)-S-oxide reductase MsrB	-

Sequence

Protein

• Length: 456 a.a.
• Molecular weight: 50231.50 Da
• Isoelectric Point: 8.2355

>NTDB_id=493254 IMS64_RS01695 WP_042524471.1 321494..322864(-) (radA) [Francisella philomiragia strain 18844]
MAKQKTIFICQECGASSPRWQGQCHNCNQWNTFVEEIKPDPKKTPIARAGFAGSISKATALADIKGKEHSRMSTNISEFD
RVLGGGIVKGSVTLVGGDPGIGKSSILLQIMSFLSLQKKVLYVSGEESLEQIALRAERLNLPKDNLLVMCETNIEQISSY
MIEHKPEVVVIDSIQTMYNPDISSMVGGVSQVRESTAYITQIAKQHEISIFLVGHVTKSGEVAGPRVLEHIVDAVIFIES
QDNGRYRMMRALKNRFGAVNEIGVFAMTDKGMKEVKNPSAIFLNNGRTNLIGSVIVSVWEGTRPLLVELQSLVVDKNINQ
PPRRLCVGIDSNRLAMILAIIQRYMHIDLYDKDVFLNVVGGIKISETSIDLALILIIYSSIKEIEIPHDMLIMGEVGLSG
EIRPVPYGIERINEAKKHGFKKIIIPQANVSKSLKANGIEIIGITNLNQIKDIIAG

Nucleotide

• Length: 1371 bp

>NTDB_id=493254 IMS64_RS01695 WP_042524471.1 321494..322864(-) (radA) [Francisella philomiragia strain 18844]
ATGGCTAAACAAAAAACTATTTTTATTTGCCAAGAATGTGGAGCTTCTTCACCTAGATGGCAAGGGCAATGTCATAATTG
TAATCAATGGAATACATTTGTTGAAGAGATAAAACCTGATCCAAAAAAAACACCTATAGCCAGAGCTGGATTTGCTGGCA
GTATCTCAAAAGCTACAGCACTAGCTGATATCAAAGGTAAAGAACACTCCAGAATGTCTACTAACATATCTGAATTTGAC
CGAGTACTTGGTGGTGGAATTGTAAAAGGATCCGTAACACTAGTTGGTGGAGATCCTGGTATCGGTAAGTCTTCAATACT
ACTACAAATTATGTCCTTTTTATCACTACAAAAAAAAGTTCTTTATGTCAGTGGTGAAGAATCTCTTGAGCAAATAGCTC
TACGAGCAGAAAGATTAAATCTCCCTAAAGATAATCTCCTAGTAATGTGCGAGACAAATATAGAACAGATCTCTAGCTAT
ATGATAGAACACAAGCCAGAAGTAGTTGTAATAGACTCAATCCAAACTATGTATAACCCTGATATCTCATCTATGGTCGG
AGGCGTCTCGCAAGTAAGAGAATCTACAGCTTATATCACTCAAATAGCTAAGCAACACGAGATATCTATTTTTTTGGTAG
GACATGTCACTAAGTCTGGCGAGGTTGCTGGTCCACGAGTATTAGAACATATTGTTGATGCGGTAATATTTATAGAATCC
CAAGACAATGGCAGATATCGTATGATGCGCGCACTAAAGAATAGATTTGGTGCAGTAAATGAAATTGGTGTCTTTGCAAT
GACTGATAAAGGTATGAAAGAAGTCAAAAATCCTTCCGCGATTTTCTTAAATAATGGTCGCACAAATTTAATTGGTAGTG
TTATCGTTTCAGTTTGGGAAGGTACACGCCCTCTACTTGTTGAGCTACAATCATTAGTTGTGGACAAAAACATCAACCAA
CCTCCACGAAGATTGTGTGTAGGTATTGATAGCAACCGACTAGCAATGATACTAGCTATTATTCAACGTTATATGCATAT
TGACTTATATGACAAAGATGTATTTTTAAATGTTGTTGGTGGAATCAAAATTAGTGAAACAAGTATTGATTTGGCACTAA
TATTGATTATATATTCTAGTATAAAGGAAATAGAGATTCCTCATGATATGCTAATAATGGGAGAAGTTGGTTTATCAGGT
GAAATTAGACCCGTACCTTATGGTATAGAACGAATAAATGAGGCAAAGAAACATGGATTTAAGAAAATTATTATACCTCA
AGCCAATGTTTCAAAATCTCTAAAGGCTAATGGTATTGAGATTATTGGGATAACAAACTTGAATCAAATTAAAGATATAA
TAGCAGGATAG

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (345-429)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• AAA domain (AAA_25) (74-220)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	48.132	99.781	0.48
radA	Streptococcus mitis NCTC 12261	44.444	98.684	0.439
radA	Streptococcus pneumoniae Rx1	44.444	98.684	0.439
radA	Streptococcus pneumoniae D39	44.444	98.684	0.439
radA	Streptococcus pneumoniae R6	44.444	98.684	0.439
radA	Streptococcus pneumoniae TIGR4	44.444	98.684	0.439
radA	Streptococcus mitis SK321	44.444	98.684	0.439