Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   INP89_RS07270 Genome accession   NZ_CP063127
Coordinates   1468066..1468719 (-) Length   217 a.a.
NCBI ID   WP_005694574.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M1C112_1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1463066..1473719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP89_RS07270 (INP89_07265) sxy/tfoX 1468066..1468719 (-) 654 WP_005694574.1 DNA transformation protein TfoX Regulator
  INP89_RS07275 (INP89_07270) recA 1469091..1470155 (+) 1065 WP_005654959.1 recombinase RecA Machinery gene
  INP89_RS07280 (INP89_07275) recX 1470235..1470693 (+) 459 WP_012055119.1 recombination regulator RecX -
  INP89_RS07285 (INP89_07280) crcB 1470690..1471076 (-) 387 WP_005658943.1 fluoride efflux transporter CrcB -
  INP89_RS07290 (INP89_07285) - 1471076..1471894 (-) 819 WP_005651073.1 Cof-type HAD-IIB family hydrolase -
  INP89_RS07295 (INP89_07290) - 1472298..1473302 (+) 1005 WP_012055120.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25001.38 Da        Isoelectric Point: 10.0171

>NTDB_id=493233 INP89_RS07270 WP_005694574.1 1468066..1468719(-) (sxy/tfoX) [Haemophilus influenzae strain M1C112_1]
MNIKDEHIDSVCSLLDQLVGNVSFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEGVLAIQLTKLGCEPFTTNELNKRFVL
SQYYALSDQILRSNRLCRKLIILSIKQILEQKLECTLRKLNRLKDLPNLTIKHERALIKVGITNVAMLREIGAENALVEL
KKSGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=493233 INP89_RS07270 WP_005694574.1 1468066..1468719(-) (sxy/tfoX) [Haemophilus influenzae strain M1C112_1]
ATGAATATAAAGGATGAGCATATAGATAGCGTTTGCTCCTTGTTAGATCAGTTAGTAGGAAATGTTTCCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCTATTTGGCAAAATAAAAAACTTTATTTACGCGGTG
AGGGTGTTCTCGCAATTCAATTAACTAAATTAGGTTGTGAACCTTTTACAACGAATGAATTGAATAAACGGTTTGTGCTT
TCACAATATTATGCACTTTCTGATCAGATTTTACGTAGTAATAGATTGTGTAGAAAATTGATTATTCTTTCTATTAAGCA
GATTCTTGAGCAGAAGCTAGAATGTACGTTAAGAAAATTGAATCGATTAAAGGATTTACCCAATTTAACGATTAAACATG
AAAGAGCTTTAATAAAAGTTGGTATTACAAATGTTGCGATGCTAAGAGAGATTGGCGCAGAAAATGCATTGGTGGAATTA
AAGAAAAGTGGCAGTGGTGCTACGCTTGATTTTTATTGGAAATTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAGCGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGTTTAAAAGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(121-198)

TfoX N-terminal domain (TfoX_N)

(14-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

99.539

100

0.995