Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   INP89_RS06985 Genome accession   NZ_CP063127
Coordinates   1418399..1418695 (+) Length   98 a.a.
NCBI ID   WP_005650837.1    Uniprot ID   Q4QMQ7
Organism   Haemophilus influenzae strain M1C112_1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1413399..1423695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP89_RS09685 - 1414118..1414207 (-) 90 Protein_1345 ABC transporter -
  INP89_RS09690 (INP89_06955) - 1414514..1414720 (+) 207 WP_415270563.1 PT domain-containing protein -
  INP89_RS09695 - 1414756..1417777 (+) 3022 Protein_1347 TonB-dependent receptor domain-containing protein -
  INP89_RS06980 (INP89_06975) - 1418047..1418406 (+) 360 WP_005694481.1 type II toxin-antitoxin system RelE/ParE family toxin -
  INP89_RS06985 (INP89_06980) HI0659 1418399..1418695 (+) 297 WP_005650837.1 helix-turn-helix domain-containing protein Machinery gene
  INP89_RS06990 (INP89_06985) - 1418856..1420772 (+) 1917 WP_012055157.1 ABC transporter ATP-binding protein -
  INP89_RS06995 (INP89_06990) - 1420782..1421318 (+) 537 WP_197541598.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  INP89_RS07000 (INP89_06995) - 1421334..1421885 (+) 552 WP_012055155.1 Sua5/YciO/YrdC/YwlC family protein -
  INP89_RS07005 (INP89_07000) aroE 1421889..1422695 (+) 807 WP_012055154.1 shikimate dehydrogenase -
  INP89_RS07010 (INP89_07005) - 1422707..1423465 (+) 759 WP_012055153.1 DUF3800 domain-containing protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 11092.94 Da        Isoelectric Point: 10.3139

>NTDB_id=493232 INP89_RS06985 WP_005650837.1 1418399..1418695(+) (HI0659) [Haemophilus influenzae strain M1C112_1]
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKL
LAPLGKTLSIVPLRVKNA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=493232 INP89_RS06985 WP_005650837.1 1418399..1418695(+) (HI0659) [Haemophilus influenzae strain M1C112_1]
ATGAATAAAATCAGCCCATTAGGTTCAAATTGGAATGAGTTTGAACAGCAAATTTTCAATGAAGAAGAAATCCGAGAAAG
TAATTTGCGTGTAGCCTTAATTAAAGAATTGATTACTTCTCGCCAGCAACTTGGGATTTCCCAAAAACAACTTGAAACCT
TAAGCGGTGTGAAGCAACCTATGATTGCACGCATTGAAAAAGGACAAACGAATCCTCAGCTTGAAACGTTGTTAAAATTA
CTCGCTCCTTTAGGGAAAACCCTGTCGATTGTGCCTCTAAGGGTAAAAAATGCCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(41-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4QMQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

100

100

1