Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   INP90_RS09430 Genome accession   NZ_CP063124
Coordinates   1937045..1937731 (-) Length   228 a.a.
NCBI ID   WP_197559617.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C113_1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1932045..1942731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP90_RS09415 (INP90_09415) nrdR 1932841..1933290 (-) 450 WP_005695670.1 transcriptional regulator NrdR -
  INP90_RS09420 (INP90_09420) recC 1933368..1936727 (-) 3360 WP_197559616.1 exodeoxyribonuclease V subunit gamma -
  INP90_RS09425 (INP90_09425) comQ 1936765..1937031 (-) 267 WP_049364346.1 DUF5374 domain-containing protein Machinery gene
  INP90_RS09430 (INP90_09430) comP 1937045..1937731 (-) 687 WP_197559617.1 DUF2572 family protein Machinery gene
  INP90_RS09435 (INP90_09435) comO 1937728..1938444 (-) 717 WP_420028310.1 hypothetical protein Machinery gene
  INP90_RS09440 (INP90_09440) comN 1938441..1938959 (-) 519 WP_197559619.1 prepilin-type cleavage/methylation domain-containing protein Machinery gene
  INP90_RS09445 (INP90_09445) suhB 1939160..1939960 (+) 801 WP_049374925.1 inositol-1-monophosphatase -
  INP90_RS09450 (INP90_09450) bioB 1940006..1941022 (-) 1017 WP_197559620.1 biotin synthase BioB -
  INP90_RS09455 (INP90_09455) thiQ 1941096..1941725 (-) 630 WP_197559621.1 thiamine ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25517.51 Da        Isoelectric Point: 9.2585

>NTDB_id=493212 INP90_RS09430 WP_197559617.1 1937045..1937731(-) (comP) [Haemophilus parainfluenzae strain M1C113_1]
MMMKKGIVTLTALILLSGLLALILLFDEQIFAFFRSQMSQRKYYVEQGLALQKISQQQQDHICQNLPLNGAEKVKQVFFE
SNGAEDKVAYSVWCKRAELFKKSPTKGINENMLRDFISSEKQADFQPHFMKVDTTLTVQKTPQVYWITQSQLEIKGNVSG
ILLAEGNLTLTGKGRISGAVITGGSLKLEEGVTVAYGKAVVTKLVQEYSQWRLVAKSWGDLSAQDQSE

Nucleotide


Download         Length: 687 bp        

>NTDB_id=493212 INP90_RS09430 WP_197559617.1 1937045..1937731(-) (comP) [Haemophilus parainfluenzae strain M1C113_1]
ATGATGATGAAAAAAGGGATTGTGACACTGACGGCTCTTATTTTACTTTCAGGATTATTGGCATTGATCTTATTATTTGA
TGAACAGATCTTTGCGTTTTTTCGATCTCAAATGAGTCAGCGAAAATATTATGTAGAACAAGGCCTGGCGTTACAGAAAA
TCAGTCAGCAGCAACAAGACCATATTTGCCAAAACTTGCCTTTAAATGGTGCTGAAAAAGTGAAACAAGTCTTTTTCGAG
TCTAACGGGGCAGAGGATAAAGTGGCCTATTCTGTTTGGTGTAAACGAGCAGAGTTATTTAAGAAATCGCCCACAAAAGG
CATTAATGAAAATATGCTGCGAGATTTTATTTCCAGTGAAAAACAAGCTGATTTTCAACCGCACTTTATGAAAGTAGATA
CTACTTTAACTGTTCAAAAAACACCGCAAGTATATTGGATAACACAAAGCCAATTAGAAATTAAAGGGAATGTGAGTGGC
ATTTTGTTAGCAGAAGGGAATTTAACTTTAACCGGCAAAGGGCGAATAAGTGGCGCGGTGATTACAGGTGGTTCACTTAA
GTTAGAGGAGGGGGTGACGGTGGCTTACGGTAAAGCCGTGGTGACAAAACTCGTACAAGAATATAGCCAATGGCGTTTGG
TGGCTAAAAGTTGGGGTGATTTAAGTGCGCAAGATCAAAGTGAATAA

Domains

Predicted by InterproScan.

Protein of unknown function (DUF2572) (DUF2572)

(5-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Haemophilus influenzae Rd KW20

52.193

100

0.522