Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   INP90_RS09440 Genome accession   NZ_CP063124
Coordinates   1938441..1938959 (-) Length   172 a.a.
NCBI ID   WP_197559619.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C113_1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1933441..1943959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP90_RS09425 (INP90_09425) comQ 1936765..1937031 (-) 267 WP_049364346.1 DUF5374 domain-containing protein Machinery gene
  INP90_RS09430 (INP90_09430) comP 1937045..1937731 (-) 687 WP_197559617.1 DUF2572 family protein Machinery gene
  INP90_RS09435 (INP90_09435) comO 1937728..1938444 (-) 717 WP_420028310.1 hypothetical protein Machinery gene
  INP90_RS09440 (INP90_09440) comN 1938441..1938959 (-) 519 WP_197559619.1 prepilin-type cleavage/methylation domain-containing protein Machinery gene
  INP90_RS09445 (INP90_09445) suhB 1939160..1939960 (+) 801 WP_049374925.1 inositol-1-monophosphatase -
  INP90_RS09450 (INP90_09450) bioB 1940006..1941022 (-) 1017 WP_197559620.1 biotin synthase BioB -
  INP90_RS09455 (INP90_09455) thiQ 1941096..1941725 (-) 630 WP_197559621.1 thiamine ABC transporter ATP-binding protein -
  INP90_RS09460 (INP90_09460) thiP 1941718..1943322 (-) 1605 WP_197559622.1 thiamine/thiamine pyrophosphate ABC transporter permease ThiP -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 20190.29 Da        Isoelectric Point: 8.9317

>NTDB_id=493214 INP90_RS09440 WP_197559619.1 1938441..1938959(-) (comN) [Haemophilus parainfluenzae strain M1C113_1]
MYKGITLLETLITLFILSLTLTFTLPKWQKNDPKYFLEKEQQRLYFFLRNIQARAENSSAIWFILANQDRANQRWCITAQ
VKNDHFCDCFHPQNCPKNLYAHFYYPYFEGKTMLIGPKLYPSEVAVKFNGARNTMETNCFILQAEEHRTLFSFFNVGSIK
LKSDQAASACTR

Nucleotide


Download         Length: 519 bp        

>NTDB_id=493214 INP90_RS09440 WP_197559619.1 1938441..1938959(-) (comN) [Haemophilus parainfluenzae strain M1C113_1]
ATGTATAAAGGGATAACCTTATTAGAAACCTTGATTACGTTATTTATTTTAAGCTTAACGTTGACGTTTACATTGCCAAA
ATGGCAGAAAAACGATCCCAAATATTTTCTCGAAAAAGAGCAACAACGGCTTTATTTTTTCTTACGCAATATTCAAGCGA
GGGCAGAAAACTCATCAGCGATTTGGTTTATTTTAGCCAATCAAGATAGGGCGAATCAGCGTTGGTGTATTACTGCTCAA
GTAAAAAACGATCATTTTTGTGATTGTTTTCATCCCCAGAATTGTCCTAAAAACCTTTATGCGCATTTTTACTATCCTTA
TTTTGAAGGGAAAACGATGCTGATAGGCCCTAAATTATATCCGTCTGAAGTGGCGGTGAAATTTAATGGGGCAAGAAATA
CCATGGAAACAAATTGTTTTATATTACAGGCTGAAGAGCATCGTACATTGTTCTCTTTTTTCAATGTTGGCAGTATCAAA
TTAAAGTCTGATCAAGCGGCGAGTGCATGTACAAGATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

60

98.837

0.593