Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   INP90_RS06025 Genome accession   NZ_CP063124
Coordinates   1202804..1205206 (+) Length   800 a.a.
NCBI ID   WP_197559287.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C113_1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1197804..1210206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP90_RS06005 (INP90_06010) dcuC 1198594..1199952 (+) 1359 WP_197559285.1 anaerobic C4-dicarboxylate transporter DcuC -
  INP90_RS06010 (INP90_06015) folK 1200007..1200510 (-) 504 WP_197559286.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  INP90_RS06015 (INP90_06020) pcnB 1200510..1201868 (-) 1359 WP_269474838.1 polynucleotide adenylyltransferase PcnB -
  INP90_RS06020 (INP90_06025) dksA 1202104..1202541 (-) 438 WP_049384440.1 RNA polymerase-binding protein DksA -
  INP90_RS06025 (INP90_06030) rec2 1202804..1205206 (+) 2403 WP_197559287.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  INP90_RS06030 (INP90_06035) msbA 1205244..1207007 (+) 1764 WP_197559288.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  INP90_RS06035 (INP90_06040) lpxK 1207061..1208041 (+) 981 WP_197559289.1 tetraacyldisaccharide 4'-kinase -
  INP90_RS06040 (INP90_06045) - 1208059..1208238 (+) 180 WP_049372406.1 Trm112 family protein -
  INP90_RS06045 (INP90_06050) kdsB 1208248..1209006 (+) 759 WP_197559290.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 800 a.a.        Molecular weight: 90059.44 Da        Isoelectric Point: 9.2115

>NTDB_id=493209 INP90_RS06025 WP_197559287.1 1202804..1205206(+) (rec2) [Haemophilus parainfluenzae strain M1C113_1]
MKITLFQLCMMLIVSALSLLVVTDFLLLTWQQAGLSILMLVMTALCFHWFNYFKARNFCISSILFLLTLAYAHSSALSLL
GQAERISSLPNKITLDLHISEILHQQDYQTLIATSSLFDGKVQQIFINWKAPEKPQLGEIWRADVKLRPISARLNHGGLD
RQQWYFSKRIIAIGNVQNAVKIGDDFSYRTHFLQNSFKQTEGLSLQGLLIALAFGERAWLDNKTWLIYQQTNTAHLIAIS
GLHIGLAMGIGFFFARLLQLALPTRFISPWFPLYFGVLIALGYAYLAGFSLPTFRAMMALLFIVILQFSRRYYTPSQMLC
LVVAFLLFCDPLMPLSVSFWLSIGAVTCLIVWYRYVPLSIIEWRHQKLSRKVRWILGLFHLQLGLLILFTPIQLFFFNGL
ALNGFLANLIAVPLYSFLLVPLILFAVLTHGAFSSWHLSNTIAQGITQCLSLFQGSYMPISINLSLILTALLSLIFSGML
GGLYFLSQAQTKNTTLKSSRFFTLNSTKILSSEDYKKALLGIILIFSICMSTLGYRYFTNPKWQLDTLDVGQGLATLIVK
EGKGVLYDSGPAWQGGIGASSMAELEILPYLQREGIELETLILSHDDNDHSGGAKAILAAYPEIELITPSRKNYDEMHRT
FCLQGKQWQWRGLDFKVLSPTQITDRAENPQSCVILFTDGQYQILLTGDADVTIERSFAEKAGKINVLQVGHHGSKTSTG
EFLVGQTKPDIALISSGRWNAWNFPHPTVIERLNRYQSAVENTAISGHIRLNFTEKGIEIEKARGDFSPWFARVIGLSPK

Nucleotide


Download         Length: 2403 bp        

>NTDB_id=493209 INP90_RS06025 WP_197559287.1 1202804..1205206(+) (rec2) [Haemophilus parainfluenzae strain M1C113_1]
ATGAAAATCACGCTATTTCAACTGTGCATGATGCTTATTGTCTCAGCCTTATCCTTGCTTGTCGTGACAGATTTTTTACT
GCTCACTTGGCAACAGGCTGGGCTGAGCATTTTAATGTTGGTTATGACCGCACTTTGTTTCCATTGGTTCAATTATTTTA
AAGCCAGAAATTTTTGCATAAGTAGTATCTTGTTTTTACTTACTTTGGCTTATGCGCATTCATCAGCCTTATCGTTATTG
GGACAAGCAGAGAGAATTTCAAGTTTACCGAATAAAATCACCTTAGATCTCCACATCTCAGAAATTCTTCATCAGCAAGA
TTATCAAACCTTGATTGCGACGAGCTCTTTATTTGATGGAAAAGTACAACAAATTTTTATTAATTGGAAAGCACCGGAAA
AGCCACAGTTAGGGGAAATTTGGCGGGCGGATGTAAAGCTTCGACCTATTTCGGCGAGATTAAACCATGGGGGATTGGAT
CGACAACAATGGTATTTTTCCAAAAGGATTATTGCCATCGGAAATGTGCAAAATGCGGTTAAAATTGGGGACGATTTTTC
TTATCGCACACATTTTCTACAGAATAGCTTCAAACAGACAGAAGGGCTTTCTTTACAAGGTTTACTTATAGCATTGGCAT
TTGGTGAGCGAGCTTGGCTGGATAATAAAACGTGGCTGATTTATCAACAAACGAATACAGCACATTTAATTGCGATTTCA
GGGCTCCATATTGGTTTAGCAATGGGGATAGGCTTTTTCTTTGCTCGATTGTTGCAACTCGCACTGCCTACACGCTTTAT
TTCGCCCTGGTTTCCACTTTACTTTGGTGTGTTGATTGCTTTAGGTTATGCCTATTTAGCCGGATTTAGTTTACCAACCT
TCCGTGCAATGATGGCACTGCTTTTTATTGTAATCCTTCAATTTTCGCGACGATATTACACGCCTTCGCAAATGCTGTGT
TTAGTCGTGGCATTTTTGTTGTTTTGCGATCCGCTTATGCCGCTTTCGGTGAGCTTTTGGCTTTCAATTGGTGCCGTTAC
CTGTCTGATTGTGTGGTACAGATATGTTCCCTTATCAATCATTGAATGGCGACATCAAAAATTATCCCGCAAAGTGCGGT
GGATTTTAGGCTTGTTTCATTTGCAGTTAGGGCTGTTGATTTTATTTACGCCTATTCAGCTTTTCTTTTTTAATGGCTTG
GCATTAAATGGGTTCTTAGCAAATTTAATTGCAGTGCCCTTGTATAGTTTTTTACTTGTGCCCTTGATTCTCTTTGCGGT
GTTGACCCATGGTGCATTTTCTTCTTGGCATCTTTCAAATACGATTGCTCAAGGTATTACACAATGCCTCAGTCTTTTCC
AAGGTTCGTATATGCCGATTTCGATTAATTTATCCCTTATTTTGACCGCACTTTTAAGCCTTATTTTTAGCGGAATGTTA
GGTGGATTGTATTTTTTGTCTCAAGCTCAAACAAAAAATACAACGTTAAAATCGAGTCGATTTTTCACGTTAAATAGTAC
AAAAATCTTATCGTCAGAAGATTATAAAAAAGCTCTATTGGGCATAATTCTTATTTTTAGTATTTGTATGAGTACTCTAG
GATATCGATATTTCACGAACCCCAAATGGCAGTTAGATACGTTAGATGTTGGTCAAGGTTTAGCAACCTTAATTGTGAAA
GAGGGGAAAGGGGTGTTGTATGACTCGGGGCCTGCTTGGCAGGGTGGAATAGGGGCTTCTTCCATGGCGGAATTAGAGAT
ATTACCTTATCTTCAACGGGAAGGTATTGAACTTGAAACCTTGATTTTAAGTCATGATGATAACGATCATTCAGGTGGAG
CTAAAGCAATTTTAGCCGCATATCCAGAGATTGAGCTGATTACACCTTCTCGCAAAAACTATGACGAAATGCACCGCACT
TTTTGTCTTCAGGGGAAACAATGGCAGTGGCGAGGGCTTGATTTTAAAGTTCTTTCACCAACGCAAATAACAGATAGGGC
GGAGAATCCTCAATCTTGCGTGATTTTATTCACGGATGGACAGTATCAAATTCTTTTAACTGGTGATGCTGATGTGACAA
TAGAAAGATCTTTTGCTGAAAAAGCAGGTAAGATCAACGTGTTACAGGTAGGGCACCATGGCAGTAAAACTTCAACTGGC
GAGTTTTTAGTGGGACAGACAAAACCGGATATCGCCTTAATTTCAAGTGGACGATGGAATGCGTGGAATTTTCCTCATCC
AACAGTCATTGAACGATTAAATCGTTATCAAAGTGCGGTCGAAAATACGGCTATTTCAGGTCATATAAGGTTAAATTTTA
CTGAAAAAGGCATTGAAATTGAAAAGGCGAGAGGGGATTTTTCACCTTGGTTTGCCCGTGTAATTGGATTATCCCCGAAA
TAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(212-475)

Domain of unknown function (DUF4131) (DUF4131)

(30-179)

Metallo-beta-lactamase superfamily (Lactamase_B)

(549-734)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

60.199

100

0.605