Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   INP90_RS04865 Genome accession   NZ_CP063124
Coordinates   987346..988299 (+) Length   317 a.a.
NCBI ID   WP_005697091.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C113_1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 982346..993299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP90_RS04845 (INP90_04850) accA 982933..983880 (-) 948 WP_049366408.1 acetyl-CoA carboxylase carboxyl transferase subunit alpha -
  INP90_RS04850 (INP90_04855) znuB 983969..984754 (-) 786 WP_049366407.1 zinc ABC transporter permease subunit ZnuB -
  INP90_RS04855 (INP90_04860) znuC 984764..985558 (-) 795 WP_197560068.1 zinc ABC transporter ATP-binding protein ZnuC -
  INP90_RS04860 (INP90_04865) mepM 985737..987212 (+) 1476 WP_049374467.1 murein DD-endopeptidase MepM -
  INP90_RS04865 (INP90_04870) ceuB 987346..988299 (+) 954 WP_005697091.1 ABC transporter permease Machinery gene
  INP90_RS04870 (INP90_04875) - 988292..989251 (+) 960 WP_075875052.1 iron chelate uptake ABC transporter family permease subunit -
  INP90_RS04875 (INP90_04880) - 989242..990003 (+) 762 WP_197560069.1 ABC transporter ATP-binding protein -
  INP90_RS04880 (INP90_04885) - 990018..990926 (+) 909 WP_070583059.1 siderophore ABC transporter substrate-binding protein -
  INP90_RS04885 (INP90_04890) - 991046..991996 (+) 951 WP_070583060.1 sigma 54-interacting transcriptional regulator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35028.23 Da        Isoelectric Point: 10.2040

>NTDB_id=493206 INP90_RS04865 WP_005697091.1 987346..988299(+) (ceuB) [Haemophilus parainfluenzae strain M1C113_1]
MIKRRYLIFLLIVLSFVSLFLGVSTVNLQGLLNFEGNQWQIFFISRVPRLISILIAGASLSICGLVMQQLSRNRFVSPTT
AGTMDSARLGILMAMLFFPTASMLLKTTIAVIVSFLGTLLFMTILSRLKFKDTIFVPLVGIMFGNIISSITAFIAYKEDL
LQNLSGWLQGDFSLVMSGRYELLYFSIPTLIVAYLFAHRFSIVGMGKDFAVNLGLNYNQVLYLGLLIVAVVSSIIIVSVG
VIPFLGLIIPNIVTLYLGDNLKKVLSHTALLGAVFVLFCDILGRSVIYPYEISINAVVGVFGSGIFLFLLLKRYRNG

Nucleotide


Download         Length: 954 bp        

>NTDB_id=493206 INP90_RS04865 WP_005697091.1 987346..988299(+) (ceuB) [Haemophilus parainfluenzae strain M1C113_1]
ATGATTAAGCGACGTTATCTGATTTTTCTTTTGATCGTGCTTTCCTTTGTTTCACTTTTTCTCGGGGTAAGTACTGTTAA
TCTGCAAGGGTTACTGAATTTTGAAGGTAATCAATGGCAGATATTTTTTATCAGTCGAGTGCCTCGTTTAATCAGTATCT
TGATTGCAGGAGCATCCTTAAGTATTTGCGGCTTAGTGATGCAGCAACTCAGTCGAAACCGATTTGTTTCTCCCACCACT
GCGGGCACCATGGATAGTGCAAGATTAGGGATTTTAATGGCGATGCTGTTTTTCCCAACGGCTTCAATGTTGTTAAAAAC
CACCATTGCGGTCATCGTATCTTTCCTTGGCACATTGTTATTTATGACGATTCTGTCCCGTTTGAAATTCAAGGACACGA
TTTTTGTGCCTTTAGTGGGGATTATGTTCGGTAATATCATCAGTTCGATTACCGCCTTTATTGCTTATAAAGAAGATTTA
TTACAAAACTTATCTGGGTGGCTACAAGGGGACTTTTCTCTTGTGATGTCAGGCCGTTATGAATTGTTGTATTTCAGTAT
TCCTACACTCATCGTGGCTTATTTATTTGCACATCGTTTTTCTATTGTCGGGATGGGGAAAGATTTTGCGGTTAATCTAG
GTCTAAATTACAATCAGGTACTTTATCTCGGATTGCTCATTGTGGCGGTGGTGTCTTCGATTATTATCGTGTCTGTTGGG
GTGATCCCTTTCTTAGGGTTAATTATTCCGAATATCGTCACACTTTATTTAGGGGATAACTTGAAGAAAGTGTTATCTCA
TACTGCCTTACTAGGTGCCGTCTTTGTCTTATTCTGCGATATTTTAGGTCGAAGTGTGATTTATCCTTATGAGATTTCCA
TTAATGCTGTGGTTGGAGTATTTGGCAGTGGTATTTTCTTATTTTTATTATTAAAACGGTATAGAAATGGCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.663

97.476

0.543