Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   SPNINV200_RS05415 Genome accession   NC_017593
Coordinates   1022474..1023283 (+) Length   269 a.a.
NCBI ID   WP_001289493.1    Uniprot ID   Q9RCS5
Organism   Streptococcus pneumoniae INV200     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1017474..1028283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPNINV200_RS05400 (SPNINV200_10070) mutY 1019196..1020371 (+) 1176 WP_000886147.1 A/G-specific adenine glycosylase -
  SPNINV200_RS05405 (SPNINV200_10080) micA 1020426..1021130 (+) 705 WP_000722076.1 response regulator YycF Regulator
  SPNINV200_RS05410 (SPNINV200_10090) micB 1021123..1022472 (+) 1350 WP_000886210.1 cell wall metabolism sensor histidine kinase VicK Regulator
  SPNINV200_RS05415 (SPNINV200_10100) vicX 1022474..1023283 (+) 810 WP_001289493.1 MBL fold metallo-hydrolase Regulator
  SPNINV200_RS05420 (SPNINV200_10110) relB 1023374..1023616 (+) 243 WP_000208080.1 type II toxin-antitoxin system RelB family antitoxin -
  SPNINV200_RS05425 (SPNINV200_10120) - 1023618..1023872 (+) 255 WP_001812387.1 type II toxin-antitoxin system RelE family toxin -
  SPNINV200_RS05430 (SPNINV200_10130) - 1023919..1024571 (+) 653 Protein_1029 potassium channel family protein -
  SPNINV200_RS05435 (SPNINV200_10140) - 1024831..1025817 (-) 987 WP_000204727.1 L-lactate dehydrogenase -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29916.89 Da        Isoelectric Point: 6.1743

>NTDB_id=49318 SPNINV200_RS05415 WP_001289493.1 1022474..1023283(+) (vicX) [Streptococcus pneumoniae INV200]
MSEIGFKYSILASGSSGNSFYLETSKKKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIEANHDVEILRSGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=49318 SPNINV200_RS05415 WP_001289493.1 1022474..1023283(+) (vicX) [Streptococcus pneumoniae INV200]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCGTCGGGTTCCAGTGGAAATTCTTTTTATCTGGAAACCTCAAAAAA
GAAGCTTTTAGTAGATGCAGGCTTGTCTGGCAAGAAAATTACCAGTCTGCTAGCTGAAATTAACCGTAAGCCAGAAGACC
TGGATGCCATCTTGATTACCCATGAGCATTCAGATCATATCCATGGAGTAGGCGTTTTGGCTCGCAAGTATGGTATGGAT
CTTTATGCCAATGAAAAGACCTGGCAAGCTATGGAAAATAGTAAATATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
TTTTGAAATGGGTAAAACCAAAACCTTTGGAGATATCGACATCGAGAGTTTTGGTGTAAGCCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGATAAGAGTTTTGTCCTTTTGACAGATACAGGTTATGTCAGTGACCGTATGGCGGGC
ATTGTCGAAAATGCGGATGGCTATCTTATCGAGGCCAACCATGATGTAGAGATTTTGCGATCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCTGACCTTGGTCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGGACGCTAGGAA
ATCGTACTAAGAAGATTTACCTTGGGCATTTATCTAAGGAAAACAATATCAAGGAACTGGCTCATATGACCATGGTCAAT
CAGCTGGCTCAAGCTGATCTGGGAGTCGGAGTAGACTTTAAGGTTTATGATACCTCACCAGATACCGCAACACCATTGAC
AGAGATATAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RCS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.323

100

0.773

Multiple sequence alignment