Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   INP91_RS07975 Genome accession   NZ_CP063123
Coordinates   1653701..1654417 (-) Length   238 a.a.
NCBI ID   WP_197546375.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C120_2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1648701..1659417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP91_RS07955 (INP91_07950) nrdR 1648814..1649263 (-) 450 WP_005695670.1 transcriptional regulator NrdR -
  INP91_RS07960 (INP91_07955) recC 1649341..1652700 (-) 3360 WP_197544742.1 exodeoxyribonuclease V subunit gamma -
  INP91_RS07965 (INP91_07960) comQ 1652738..1653004 (-) 267 WP_049383247.1 DUF5374 domain-containing protein Machinery gene
  INP91_RS07970 (INP91_07965) comP 1653027..1653704 (-) 678 WP_197544743.1 DUF2572 family protein Machinery gene
  INP91_RS07975 (INP91_07970) comO 1653701..1654417 (-) 717 WP_197546375.1 PulJ/GspJ family protein Machinery gene
  INP91_RS07980 (INP91_07975) comN 1654414..1654932 (-) 519 WP_197544744.1 prepilin-type cleavage/methylation domain-containing protein Machinery gene
  INP91_RS07985 (INP91_07980) suhB 1655133..1655933 (+) 801 WP_005695663.1 inositol-1-monophosphatase -
  INP91_RS07990 (INP91_07985) bioB 1655979..1656995 (-) 1017 WP_049366106.1 biotin synthase BioB -
  INP91_RS07995 (INP91_07990) thiQ 1657069..1657698 (-) 630 WP_197544745.1 thiamine ABC transporter ATP-binding protein -
  INP91_RS08000 (INP91_07995) thiP 1657691..1659295 (-) 1605 WP_197544746.1 thiamine/thiamine pyrophosphate ABC transporter permease ThiP -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26634.71 Da        Isoelectric Point: 7.9298

>NTDB_id=493175 INP91_RS07975 WP_197546375.1 1653701..1654417(-) (comO) [Haemophilus parainfluenzae strain M1C120_2]
MKPLKGETLVSLLISLGLSALLLLLVAQFYTQTQQQNQRLMLQLKLQAELQRTIQLIGKDLRRVGFRGANQKLIEDNLVL
FELDEKGTAITIAQADNAPSNSCVLFFYDLNSNGCIGEKYTKNTCVNGVKNVAKNIEKELFGYKLNGKMIETKQTYKNAV
NADCRSAECQRALAQSTCNAGGGWTDLLDEKEFEISQLRFDWLKAGKGIEIKLTGHLAAYKHIQYETSLVVPLLNQEE

Nucleotide


Download         Length: 717 bp        

>NTDB_id=493175 INP91_RS07975 WP_197546375.1 1653701..1654417(-) (comO) [Haemophilus parainfluenzae strain M1C120_2]
ATGAAACCATTAAAAGGTGAAACATTGGTGAGCTTATTGATTTCACTTGGCTTATCCGCTTTATTATTGTTATTGGTTGC
ACAATTTTATACCCAAACTCAACAGCAAAATCAGCGTTTAATGTTACAACTCAAACTACAAGCAGAATTACAACGCACAA
TTCAACTCATCGGGAAAGATTTGCGTCGCGTAGGCTTTCGGGGCGCAAACCAAAAACTCATCGAGGATAATCTGGTTTTA
TTTGAATTGGATGAAAAGGGCACTGCAATAACCATTGCTCAAGCTGATAATGCCCCGTCAAATAGTTGTGTTTTGTTTTT
TTATGATTTGAATAGCAATGGTTGTATTGGTGAAAAATACACAAAAAATACCTGCGTAAATGGCGTTAAAAATGTGGCGA
AAAATATCGAAAAAGAGCTATTTGGTTACAAACTTAACGGCAAAATGATCGAAACCAAACAAACCTACAAAAATGCAGTA
AATGCAGATTGTCGCTCAGCAGAGTGTCAGCGAGCCTTAGCGCAATCTACTTGTAACGCTGGTGGTGGATGGACTGATTT
ATTGGATGAAAAAGAGTTTGAGATTTCTCAATTACGTTTTGATTGGTTAAAGGCAGGGAAAGGGATTGAAATTAAACTCA
CAGGGCATCTTGCCGCATATAAGCATATTCAATATGAAACTTCGCTTGTAGTGCCTTTATTAAATCAAGAAGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

61.966

98.319

0.609