Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   INP91_RS03730 Genome accession   NZ_CP063123
Coordinates   763162..764115 (+) Length   317 a.a.
NCBI ID   WP_005697091.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C120_2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 758162..769115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP91_RS03710 (INP91_03710) accA 758748..759695 (-) 948 WP_197546241.1 acetyl-CoA carboxylase carboxyl transferase subunit alpha -
  INP91_RS03715 (INP91_03715) znuB 759784..760569 (-) 786 WP_049366407.1 zinc ABC transporter permease subunit ZnuB -
  INP91_RS03720 (INP91_03720) znuC 760579..761373 (-) 795 WP_197546242.1 zinc ABC transporter ATP-binding protein ZnuC -
  INP91_RS03725 (INP91_03725) mepM 761552..763027 (+) 1476 WP_197546243.1 murein DD-endopeptidase MepM -
  INP91_RS03730 (INP91_03730) ceuB 763162..764115 (+) 954 WP_005697091.1 ABC transporter permease Machinery gene
  INP91_RS03735 (INP91_03735) - 764108..765067 (+) 960 WP_197546244.1 iron chelate uptake ABC transporter family permease subunit -
  INP91_RS03740 (INP91_03740) - 765058..765819 (+) 762 WP_197546245.1 ABC transporter ATP-binding protein -
  INP91_RS03745 (INP91_03745) - 765834..766742 (+) 909 WP_197546246.1 siderophore ABC transporter substrate-binding protein -
  INP91_RS03750 (INP91_03750) - 766863..767813 (+) 951 WP_197546247.1 sigma 54-interacting transcriptional regulator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35028.23 Da        Isoelectric Point: 10.2040

>NTDB_id=493169 INP91_RS03730 WP_005697091.1 763162..764115(+) (ceuB) [Haemophilus parainfluenzae strain M1C120_2]
MIKRRYLIFLLIVLSFVSLFLGVSTVNLQGLLNFEGNQWQIFFISRVPRLISILIAGASLSICGLVMQQLSRNRFVSPTT
AGTMDSARLGILMAMLFFPTASMLLKTTIAVIVSFLGTLLFMTILSRLKFKDTIFVPLVGIMFGNIISSITAFIAYKEDL
LQNLSGWLQGDFSLVMSGRYELLYFSIPTLIVAYLFAHRFSIVGMGKDFAVNLGLNYNQVLYLGLLIVAVVSSIIIVSVG
VIPFLGLIIPNIVTLYLGDNLKKVLSHTALLGAVFVLFCDILGRSVIYPYEISINAVVGVFGSGIFLFLLLKRYRNG

Nucleotide


Download         Length: 954 bp        

>NTDB_id=493169 INP91_RS03730 WP_005697091.1 763162..764115(+) (ceuB) [Haemophilus parainfluenzae strain M1C120_2]
ATGATTAAGCGGCGTTATCTGATTTTTCTTTTAATCGTGCTTTCCTTTGTTTCACTTTTTCTCGGGGTAAGTACCGTTAA
TTTACAAGGATTACTGAATTTTGAAGGTAATCAGTGGCAGATTTTTTTCATCAGTCGTGTGCCACGTTTAATCAGTATTT
TGATTGCTGGCGCATCTTTAAGTATTTGTGGCTTGGTGATGCAGCAACTCAGTCGAAACCGATTTGTTTCTCCCACCACT
GCGGGCACCATGGATAGTGCAAGATTAGGGATTTTAATGGCGATGCTGTTTTTCCCAACGGCTTCAATGTTGTTAAAAAC
AACCATTGCGGTGATTGTGTCTTTCCTTGGCACATTGTTATTTATGACGATTCTGTCCCGTTTGAAATTCAAGGACACCA
TTTTTGTACCTTTAGTGGGGATTATGTTTGGCAATATCATCAGTTCGATTACCGCCTTTATTGCTTACAAAGAAGATTTA
TTGCAAAACTTATCGGGATGGTTACAAGGGGATTTTTCGCTTGTGATGTCTGGTCGTTATGAATTGTTGTATTTCAGTAT
TCCTACACTCATCGTGGCTTATTTATTTGCGCATCGTTTTTCTATTGTTGGAATGGGGAAAGATTTTGCCGTCAATCTTG
GTCTAAATTACAACCAAGTACTTTATCTCGGATTGCTCATTGTGGCGGTGGTGTCTTCGATTATTATCGTGTCTGTTGGG
GTGATCCCTTTCTTAGGGTTAATTATTCCGAATATCGTTACACTTTATTTAGGGGATAACTTGAAGAAAGTGTTATCTCA
TACCGCTTTGCTAGGTGCCGTCTTTGTCTTATTCTGTGATATTTTAGGTCGAAGTGTGATTTATCCTTATGAGATTTCCA
TTAATGCCGTGGTTGGTGTATTTGGTAGTGGTATCTTCTTATTTTTATTATTAAAACGGTATAGAAATGGCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.663

97.476

0.543