Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   INP92_RS08885 Genome accession   NZ_CP063122
Coordinates   1849498..1850214 (-) Length   238 a.a.
NCBI ID   WP_420026421.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C125_4     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1844498..1855214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP92_RS08865 (INP92_08860) nrdR 1844611..1845060 (-) 450 WP_005695670.1 transcriptional regulator NrdR -
  INP92_RS08870 (INP92_08865) recC 1845138..1848497 (-) 3360 WP_197544742.1 exodeoxyribonuclease V subunit gamma -
  INP92_RS08875 (INP92_08870) comQ 1848535..1848801 (-) 267 WP_049383247.1 DUF5374 domain-containing protein Machinery gene
  INP92_RS08880 (INP92_08875) comP 1848824..1849501 (-) 678 WP_197554114.1 DUF2572 family protein Machinery gene
  INP92_RS08885 (INP92_08880) comO 1849498..1850214 (-) 717 WP_420026421.1 hypothetical protein Machinery gene
  INP92_RS08890 (INP92_08885) comN 1850211..1850729 (-) 519 WP_197554117.1 prepilin-type cleavage/methylation domain-containing protein Machinery gene
  INP92_RS08895 (INP92_08890) suhB 1850930..1851730 (+) 801 WP_005695663.1 inositol-1-monophosphatase -
  INP92_RS08900 (INP92_08895) bioB 1851776..1852792 (-) 1017 WP_049366106.1 biotin synthase BioB -
  INP92_RS08905 (INP92_08900) thiQ 1852866..1853495 (-) 630 WP_197544745.1 thiamine ABC transporter ATP-binding protein -
  INP92_RS08910 (INP92_08905) thiP 1853488..1855092 (-) 1605 WP_197554120.1 thiamine/thiamine pyrophosphate ABC transporter permease ThiP -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26571.61 Da        Isoelectric Point: 7.9319

>NTDB_id=493151 INP92_RS08885 WP_420026421.1 1849498..1850214(-) (comO) [Haemophilus parainfluenzae strain M1C125_4]
MKPLKGETLVSLLISLGLSALLLLLVAQFYAQTQQQNQRLMLQLKLQAELQRTIQLIGKDLRRVGFRAANQKLIEDNLAL
FELDEKGTAITIAQADNAPSNSCVLFFYDLNSNGCIGEKYTKNTCVNGVKNVAKNIEKELFGYKLNGKMIETKQTYKNAV
NADCRSAECQRALTQSTCNAGGGWTDLLDEKEFEISQLRFDWLKAGKGIEIKLAGNLATHKHIQYETSLVVPLLNQEE

Nucleotide


Download         Length: 717 bp        

>NTDB_id=493151 INP92_RS08885 WP_420026421.1 1849498..1850214(-) (comO) [Haemophilus parainfluenzae strain M1C125_4]
ATGAAACCATTAAAAGGCGAAACATTGGTGAGTTTATTGATTTCACTTGGCTTATCCGCTTTATTATTGCTATTGGTTGC
ACAGTTTTATGCCCAAACTCAACAGCAAAATCAGCGTTTAATGTTACAACTCAAACTACAAGCAGAATTACAACGCACAA
TTCAACTCATCGGGAAAGATCTGCGTCGCGTAGGCTTTCGAGCCGCAAACCAAAAACTCATTGAAGATAATCTGGCTTTA
TTCGAATTAGACGAAAAGGGCACTGCAATAACCATTGCTCAAGCTGATAATGCCCCGTCAAATAGCTGTGTCTTATTTTT
TTATGACTTGAATAGTAATGGCTGTATTGGTGAAAAATACACAAAAAATACCTGTGTAAATGGTGTTAAAAATGTGGCAA
AAAATATCGAAAAGGAGCTATTTGGTTACAAACTTAACGGCAAAATGATCGAAACCAAACAAACTTATAAAAATGCGGTA
AATGCGGATTGTCGTTCAGCAGAGTGTCAGCGTGCTTTAACGCAATCTACTTGTAACGCCGGTGGTGGATGGACAGATTT
ATTGGATGAAAAAGAGTTTGAGATCTCTCAATTACGTTTTGATTGGTTAAAGGCAGGGAAAGGGATTGAAATCAAACTCG
CGGGAAATCTTGCAACACATAAGCATATTCAATATGAAACTTCGCTTGTGGTGCCTTTATTAAATCAAGAAGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

62.821

98.319

0.618