Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   INP92_RS05865 Genome accession   NZ_CP063122
Coordinates   1188353..1190755 (+) Length   800 a.a.
NCBI ID   WP_197544420.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C125_4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1183353..1195755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP92_RS05845 (INP92_05845) dcuC 1184143..1185501 (+) 1359 WP_197553464.1 anaerobic C4-dicarboxylate transporter DcuC -
  INP92_RS05850 (INP92_05850) folK 1185556..1186059 (-) 504 WP_197553467.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  INP92_RS05855 (INP92_05855) pcnB 1186059..1187555 (-) 1497 WP_420026420.1 polynucleotide adenylyltransferase PcnB -
  INP92_RS05860 (INP92_05860) dksA 1187653..1188090 (-) 438 WP_049384440.1 RNA polymerase-binding protein DksA -
  INP92_RS05865 (INP92_05865) rec2 1188353..1190755 (+) 2403 WP_197544420.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  INP92_RS05870 (INP92_05870) msbA 1190806..1192554 (+) 1749 WP_005697209.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  INP92_RS05875 (INP92_05875) lpxK 1192608..1193588 (+) 981 WP_197544421.1 tetraacyldisaccharide 4'-kinase -
  INP92_RS05880 (INP92_05880) - 1193605..1193784 (+) 180 WP_049372406.1 Trm112 family protein -
  INP92_RS05885 (INP92_05885) kdsB 1193794..1194552 (+) 759 WP_049362145.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 800 a.a.        Molecular weight: 90058.56 Da        Isoelectric Point: 9.1530

>NTDB_id=493147 INP92_RS05865 WP_197544420.1 1188353..1190755(+) (rec2) [Haemophilus parainfluenzae strain M1C125_4]
MKITLFQLCMMLIVSALSLLIVPDFLLFTWQQAGLSILMLVMTALCFHWFNYFKARNFCISGILFLITLAYAHSPALSLL
GQAEKISSLPNKITLDLHISEILHQQDYQTLVATTSLFDGKEQQIFINWKALEKPQVGEIWQAEVKLRPISARLNHGGFD
RQQWYFSKRIIAVGYVKSAVKIEDDFSYRTHFLQNSLKQTEGLSLQGLLIALAFGERAWLDNKTWLIYQQTNTAHLIAIS
GLHIGLAMGIGFFFARLLQLVLPTRFISPWFPLCFGVLIALGYAYLAGFSLPTFRAMMALLFIAILQCSRRYYTPSKMLC
LVVAFLLFCDSIMPLSVSLWLSVGAVTCLIVWYRYVPLSIFEWRHQKLSRKVRWILGLFHLQFGLLILFTPIQLFFFNGF
ALNGFLANLIAVPLYSFLLVPLILFAVLTNGAFSSWPLSNAIAQGITQCLSFFQGSYMPISMNLSLVLTALLSFVFGSML
CGLYFASQTQTKNTPLKSSRFFTLNYTKILSPKAYKQALLGVILIFSVCMSTLGYRYFTKPKWQLDTLDVGQGLATLIVK
EGKGVLYDTGPAWQSGTGGSSMAELEILPYLQREGIELETLILSHDDNDHSGGAKTILTAYPEIELITPSRKSYGEMHRT
FCLQGKQWQWRGLDFKVLSPAQITDRAENPQSCVILLTDGQYQILLTGDVDVATERSFAENLGKINVLQVGHHGSKTSTG
EFLLGQTKPDIALISSGRWNAWNFPHPTVIERLNRYQSAVENSAISGHIRLNFTEKGIEIEKARGDFSPWFARVIGLSPK

Nucleotide


Download         Length: 2403 bp        

>NTDB_id=493147 INP92_RS05865 WP_197544420.1 1188353..1190755(+) (rec2) [Haemophilus parainfluenzae strain M1C125_4]
ATGAAAATCACGCTATTTCAACTGTGCATGATGCTCATTGTCTCAGCCTTATCCTTGCTTATCGTGCCCGATTTTTTACT
GTTCACTTGGCAACAGGCGGGACTGAGCATTTTAATGTTGGTTATGACCGCACTTTGTTTCCATTGGTTCAATTATTTTA
AAGCCAGAAATTTTTGCATAAGTGGTATCTTGTTTTTGATTACTTTGGCTTATGCGCATTCACCAGCTTTATCGTTATTG
GGACAAGCAGAGAAAATTTCAAGTTTACCGAATAAAATTACCTTAGATCTCCACATCTCAGAAATTCTTCATCAGCAAGA
TTATCAAACGTTGGTTGCGACAACCTCTTTATTTGATGGAAAAGAACAACAGATTTTTATTAATTGGAAAGCGCTGGAAA
AGCCACAAGTAGGTGAAATTTGGCAGGCAGAAGTAAAACTTCGACCTATATCTGCAAGATTAAATCATGGAGGATTTGAT
CGACAGCAATGGTATTTTTCCAAAAGGATTATTGCCGTTGGATATGTGAAAAGTGCGGTCAAAATTGAAGACGATTTTTC
TTATCGCACACATTTTCTACAGAATAGCCTCAAACAGACAGAAGGGCTTTCTTTACAAGGTTTGCTTATTGCATTGGCAT
TTGGTGAGCGGGCTTGGTTGGATAATAAAACGTGGTTGATTTACCAACAAACGAATACAGCACATTTAATTGCGATTTCA
GGGCTTCATATTGGTTTAGCCATGGGGATAGGCTTTTTCTTTGCTCGATTATTGCAGCTCGTACTGCCTACACGCTTTAT
TTCACCCTGGTTTCCACTTTGCTTTGGTGTGTTGATTGCCTTAGGTTATGCCTATTTAGCCGGATTTAGTTTACCGACTT
TCCGTGCAATGATGGCGTTGCTTTTTATTGCAATCCTTCAATGTTCTCGACGATATTACACGCCTTCGAAAATGCTTTGT
TTAGTGGTGGCATTTTTGTTGTTTTGCGATTCGATTATGCCACTTTCGGTGAGCCTTTGGCTTTCAGTTGGTGCTGTTAC
TTGTTTGATTGTGTGGTACCGATATGTTCCCTTATCGATCTTTGAATGGCGACATCAAAAATTATCCCGCAAAGTGCGGT
GGATTTTGGGCTTGTTTCATTTGCAGTTCGGGCTTCTAATTTTATTCACACCTATTCAGCTTTTCTTTTTTAATGGCTTT
GCGTTAAATGGATTTTTGGCGAATTTAATCGCCGTGCCCTTGTATAGTTTCTTACTGGTACCCTTGATTCTTTTTGCGGT
GTTAACGAATGGCGCATTTTCTTCTTGGCCTCTTTCAAATGCGATTGCTCAAGGTATTACGCAATGCCTCAGTTTTTTCC
AGGGCTCGTATATGCCAATTTCGATGAATTTATCCCTCGTTTTGACTGCACTTTTAAGCTTTGTTTTTGGCAGCATGTTA
TGTGGATTGTATTTTGCATCTCAAACTCAAACAAAAAATACACCGTTAAAATCAAGTCGATTTTTTACATTAAATTACAC
AAAAATCTTATCGCCAAAAGCTTATAAGCAAGCTCTTTTAGGCGTTATTCTTATTTTTAGTGTTTGTATGAGTACGCTAG
GGTATCGATATTTTACGAAACCCAAATGGCAGTTAGATACGTTAGATGTTGGTCAAGGTTTAGCAACCTTAATTGTAAAA
GAAGGGAAAGGCGTGTTGTATGATACGGGCCCAGCTTGGCAGAGTGGAACAGGGGGCTCTTCCATGGCGGAATTGGAAAT
ATTGCCTTATCTTCAACGGGAAGGGATTGAACTTGAAACCTTGATTTTAAGCCATGATGATAATGACCATTCAGGCGGTG
CTAAAACGATTTTAACCGCATACCCAGAGATTGAGCTGATTACACCTTCTCGCAAAAGCTATGGCGAAATGCACCGCACT
TTTTGTCTTCAGGGGAAACAATGGCAATGGCGAGGACTTGATTTTAAAGTTCTTTCACCTGCACAAATTACAGACAGGGC
GGAAAATCCGCAATCTTGCGTAATTTTACTAACGGATGGGCAGTATCAGATCCTTTTAACCGGTGATGTTGATGTGGCAA
CAGAAAGATCTTTTGCTGAAAACCTCGGCAAGATTAACGTGTTACAGGTGGGGCATCATGGTAGTAAAACTTCAACAGGC
GAGTTTTTACTGGGACAGACAAAACCGGATATAGCCTTAATTTCAAGTGGACGATGGAATGCGTGGAATTTTCCTCATCC
AACCGTGATTGAACGGTTAAATCGTTATCAAAGTGCGGTCGAAAATAGCGCTATTTCAGGTCATATAAGGTTAAATTTTA
CTGAAAAGGGCATTGAAATTGAAAAAGCGAGAGGAGATTTTTCACCTTGGTTTGCCCGTGTAATTGGATTATCCCCGAAA
TAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(34-179)

Competence protein (Competence)

(212-484)

Metallo-beta-lactamase superfamily (Lactamase_B)

(549-735)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

60.424

100

0.605