Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   INP92_RS04930 Genome accession   NZ_CP063122
Coordinates   999955..1000908 (+) Length   317 a.a.
NCBI ID   WP_269473752.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C125_4     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 994955..1005908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP92_RS04910 (INP92_04910) accA 995541..996488 (-) 948 WP_049374469.1 acetyl-CoA carboxylase carboxyl transferase subunit alpha -
  INP92_RS04915 (INP92_04915) znuB 996577..997362 (-) 786 WP_005699689.1 zinc ABC transporter permease subunit ZnuB -
  INP92_RS04920 (INP92_04920) znuC 997372..998166 (-) 795 WP_197553315.1 zinc ABC transporter ATP-binding protein ZnuC -
  INP92_RS04925 (INP92_04925) mepM 998345..999820 (+) 1476 WP_070635290.1 murein DD-endopeptidase MepM -
  INP92_RS04930 (INP92_04930) ceuB 999955..1000908 (+) 954 WP_269473752.1 ABC transporter permease Machinery gene
  INP92_RS04935 (INP92_04935) - 1000901..1001860 (+) 960 WP_197553318.1 iron chelate uptake ABC transporter family permease subunit -
  INP92_RS04940 (INP92_04940) - 1001851..1002612 (+) 762 WP_197553321.1 ABC transporter ATP-binding protein -
  INP92_RS04945 (INP92_04945) - 1002627..1003535 (+) 909 WP_197553324.1 siderophore ABC transporter substrate-binding protein -
  INP92_RS04950 (INP92_04950) - 1003656..1004606 (+) 951 WP_049384312.1 sigma 54-interacting transcriptional regulator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35024.24 Da        Isoelectric Point: 10.2040

>NTDB_id=493145 INP92_RS04930 WP_269473752.1 999955..1000908(+) (ceuB) [Haemophilus parainfluenzae strain M1C125_4]
MIKRRYLIFLLIVLSFISLFLGVSTVNLQGLLNFEGNQWQIFLISRVPRLISILIAGASLSICGLVMQQLSRNRFVSPTT
AGTMDSARLGILMAMLFFPTASMLLKTTIAVIVSFLGTLLFMTILSRLKFKDTIFVPLVGIMFGNIISSITAFIAYKEDL
LQNLSGWLQGDFSLVMSGRYELLYFSIPTLIVAYLFAHRFSIVGMGKDFAVNLGLNYNQVLYLGLLIVAVVSSIIIVSVG
VIPFLGLIIPNIVTLYLGDNLKKVLSHTALLGSVFVLFCDILGRSVIYPYEISINAVVGVFGSGIFLFLLLKRYRNG

Nucleotide


Download         Length: 954 bp        

>NTDB_id=493145 INP92_RS04930 WP_269473752.1 999955..1000908(+) (ceuB) [Haemophilus parainfluenzae strain M1C125_4]
ATGATTAAGAGACGTTATCTGATTTTTCTTTTGATAGTGCTTTCCTTTATTTCACTTTTTCTCGGGGTAAGTACCGTTAA
TTTGCAAGGGTTACTGAATTTTGAAGGTAATCAATGGCAGATCTTTTTAATTAGTCGCGTGCCTCGCTTAATCAGTATCT
TGATTGCAGGTGCATCCTTAAGTATTTGTGGTTTAGTGATGCAACAACTCAGTCGAAACCGATTTGTTTCTCCCACCACT
GCGGGCACCATGGATAGTGCAAGATTAGGGATTTTAATGGCGATGCTGTTTTTCCCAACAGCTTCAATGTTGTTAAAAAC
CACCATTGCGGTGATTGTATCTTTCCTTGGCACATTGTTATTTATGACTATTCTGTCCCGTTTGAAATTCAAGGACACAA
TTTTTGTGCCTTTAGTGGGGATTATGTTTGGTAATATCATCAGTTCAATTACTGCCTTTATCGCTTACAAAGAAGATCTA
TTGCAAAACTTATCCGGGTGGCTACAAGGGGACTTTTCTCTTGTGATGTCTGGCCGCTATGAATTGTTGTATTTCAGTAT
TCCTACACTCATCGTGGCTTATTTATTTGCGCATCGTTTTTCTATTGTCGGGATGGGGAAAGATTTTGCGGTTAATCTAG
GTCTAAATTACAACCAGGTGCTTTATCTCGGTCTGCTCATTGTGGCGGTCGTGTCTTCGATTATTATCGTGTCTGTTGGC
GTGATTCCTTTCTTGGGGTTAATTATCCCGAATATCGTCACGCTTTATTTAGGGGATAACTTGAAGAAAGTACTCTCTCA
TACTGCTTTATTGGGCTCTGTATTTGTCTTGTTCTGCGATATTTTAGGTCGAAGTGTGATTTATCCTTATGAGATTTCCA
TTAATGCCGTAGTTGGTGTATTTGGCAGTGGTATCTTCTTGTTTTTATTATTAAAGCGGTATAGAAATGGCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.663

97.476

0.543