Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   INP92_RS02165 Genome accession   NZ_CP063122
Coordinates   430601..431269 (-) Length   222 a.a.
NCBI ID   WP_193452053.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C125_4     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 425601..436269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP92_RS02165 (INP92_02165) sxy/tfoX 430601..431269 (-) 669 WP_193452053.1 TfoX/Sxy family DNA transformation protein Regulator
  INP92_RS02170 (INP92_02170) - 431499..432341 (+) 843 WP_197545017.1 patatin-like phospholipase family protein -
  INP92_RS02175 (INP92_02175) recA 432477..433532 (+) 1056 WP_111388079.1 recombinase RecA Machinery gene
  INP92_RS02180 (INP92_02180) recX 433602..434054 (+) 453 WP_197545018.1 recombination regulator RecX -
  INP92_RS02185 (INP92_02185) crcB 434029..434424 (-) 396 WP_049365038.1 fluoride efflux transporter CrcB -
  INP92_RS02190 (INP92_02190) - 434425..435243 (-) 819 WP_197546015.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25459.73 Da        Isoelectric Point: 10.2220

>NTDB_id=493135 INP92_RS02165 WP_193452053.1 430601..431269(-) (sxy/tfoX) [Haemophilus parainfluenzae strain M1C125_4]
MKTLIIPNDHISKVCDLLNQLIGDVTSKNLFTGYGLYHKEKDMFAVWANNKVYLRAKDELSIKLKGLGCKPFATNELNKR
FVLSDYYALTESILKDNVLMRTLIILSISQIRKEKLDSALSKIGRIRDLPNLSVKYERALKKVGIDNVDTLRQIGAENAI
VRLKKADIGATEAFYWRLRGALENRNCEFYTEKEKERGLSKLNEILSANGFRRCKRTLKKAE

Nucleotide


Download         Length: 669 bp        

>NTDB_id=493135 INP92_RS02165 WP_193452053.1 430601..431269(-) (sxy/tfoX) [Haemophilus parainfluenzae strain M1C125_4]
ATGAAAACTCTCATAATCCCAAATGATCATATCAGTAAAGTATGTGATTTGTTAAATCAACTTATCGGAGATGTGACAAG
TAAAAATTTATTTACGGGATATGGCTTGTATCATAAAGAGAAAGATATGTTTGCGGTTTGGGCAAACAATAAGGTTTACT
TACGTGCTAAGGATGAGCTTTCGATAAAATTAAAAGGACTTGGCTGTAAACCTTTTGCAACAAATGAACTCAATAAACGC
TTCGTATTATCTGATTATTATGCTTTAACTGAAAGCATCTTGAAAGATAATGTTTTAATGAGAACCTTGATCATTCTTTC
TATCAGTCAAATCAGGAAGGAAAAATTAGATTCTGCACTCTCTAAGATTGGACGGATTCGTGATTTACCGAATTTATCGG
TTAAGTATGAAAGAGCTCTGAAGAAAGTGGGTATTGATAATGTTGATACCTTACGACAAATAGGCGCTGAAAATGCGATT
GTTCGTTTGAAGAAAGCGGATATTGGGGCAACTGAAGCTTTCTATTGGCGGCTTCGAGGCGCTTTAGAGAATCGTAATTG
TGAGTTTTATACTGAAAAAGAGAAGGAAAGAGGTCTTAGTAAACTTAATGAAATACTTTCTGCAAATGGGTTTAGACGTT
GTAAGCGGACCTTAAAAAAGGCTGAATAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(17-110)

TfoX C-terminal domain (TfoX_C)

(125-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

59.42

93.243

0.554